NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, June 4, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS26627.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26627.1 Public Mus musculus 13 Irx1 23 108 98 CCDS HistoryNCBI Gene:16371Re-query CCDS DB by CCDS ID:26627.1Re-query CCDS DB by GeneID:16371See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26627.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077337.8 ENSMUSP00000076562.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077337.8Link to Ensembl Protein Viewer:ENSMUSP00000076562.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000077337Re-query CCDS DB by Protein ID:ENSMUSP00000076562
Original member Current member NCBI NM_010573.2 NP_034703.2 Accepted alive Link to Nucleotide Sequence:NM_010573.2Link to Protein Sequence:NP_034703.2Re-query CCDS DB by Nucleotide ID:NM_010573Re-query CCDS DB by Protein ID:NP_034703Link to BLAST:NP_034703.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034703.2 480 P81068 480 100% 0 0

Chromosomal Locations for CCDS 26627.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 71958616 71958673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 71958901 71958973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 71959250 71960285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 71963213 71963488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1443 nt):
ATGTCCTTCCCGCAGCTGGGCTACCCGCAATACCTAAGCGCCGCGGGCCCGGGCGCCTATGGTGGAGAGC
GCCCTGGGGTGCTGGCTGCGGCCGCGGCTGCTGCGGCCGCCGCCTCGTCGGGCCGTCCCGGGACTGCGGA
GCTGGGAGCGGGCGCGGGAGCGGCCGCGGTCACCTCGGTGCTAGGCATGTATGCCGCGGCGGGACCGTAC
GCGGGCGCACCCAACTACAGCGCCTTCTTGCCCTATGCCGCGGACCTCAGCCTCTTCTCGCAGATGGGCT
CTCAGTATGAACTGAAGGACAACCCCGGGGTGCACCCAGCGACCTTCGCAGCCCACACAACGCCTGCTTA
TTATCCCTATGGTCAGTTTCAATACGGGGATCCCGGACGGCCCAAGAACGCCACGCGGGAGAGCACCAGC
ACGCTGAAAGCCTGGCTCAACGAACACCGCAAGAACCCGTACCCCACCAAAGGAGAGAAGATTATGCTGG
CCATTATCACCAAGATGACCCTCACACAGGTCTCCACCTGGTTCGCCAATGCGCGCCGGCGCCTCAAGAA
GGAGAACAAGGTGACTTGGGGGGCGCGCAGCAAGGACCAGGAAGACGGCGCCCTCTTTGGCAGCGACACC
GAGGGCGACCCCGAGAAGGCCGAGGACGACGAGGAGATCGACCTGGAGAGCATTGACATCGATCAGATCG
ACGAGCGTGATGGCGACCAGAGCAACGAAGACGAAGAGGACAAGGCGGAGGCTCCTAGGGCGCGCGTAGC
CCCTCCCGCCTCAGCTCGGGACCAGAGCTCCCCATTGTCGGCTGCTGAGACACTCAAGTCTCAAGATTCG
CCCTTGGGCCTGGTTAAGGAGGTCTCAGAGCCCGGCAGCACACGCCTGCTGAGTCCTGGCGCCGCGGCGG
TCGGCCTGCAGGGCGCGCCGCACAGCAAGCCCAAGATCTGGTCTCTGGCTGAGACAGCCACTAGCCCCGA
TGGTGCGCCTAAGGCGTCTCCACCGCCACCCTCAAGCCACGCCAGCGCACACGGGCCGCCCAGCGGCTCA
CCCCTGCAACACCCGGCCTTTCTACCCAGCCACGGACTGTACACCTGTCACATAGGCAAGTTTTCCAACT
GGACCAACGGCGCGTTCCTAGCACAGGGCTCGCTGCTGAACATGCGATCTTTCCTGGGCGTCAGCGCGCC
GCATGCAGCACCTCACGGCCCACACCTGACAGCACCACCACCTCCACAGCCGCCAGTCCAGGTTGCCACC
GGGGTGCTCCATGGTGAGAAGGCCTCCGCACGCAGCAGTCCTGCACTTCCAGAGAGAGACCTAGTCACCA
GACCGGATTCGCCCCCACAACAGTTAAAGTCGCCCTTCCAGCCGGTGCGCGACAACTCGCTGGCCCCGCA
GGAGGGAACGCCTCGGATCCTCGCAGCCCTCCCGTCTGCCTGA

Translation (480 aa):
MSFPQLGYPQYLSAAGPGAYGGERPGVLAAAAAAAAAASSGRPGTAELGAGAGAAAVTSVLGMYAAAGPY
AGAPNYSAFLPYAADLSLFSQMGSQYELKDNPGVHPATFAAHTTPAYYPYGQFQYGDPGRPKNATRESTS
TLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKVTWGARSKDQEDGALFGSDT
EGDPEKAEDDEEIDLESIDIDQIDERDGDQSNEDEEDKAEAPRARVAPPASARDQSSPLSAAETLKSQDS
PLGLVKEVSEPGSTRLLSPGAAAVGLQGAPHSKPKIWSLAETATSPDGAPKASPPPPSSHASAHGPPSGS
PLQHPAFLPSHGLYTCHIGKFSNWTNGAFLAQGSLLNMRSFLGVSAPHAAPHGPHLTAPPPPQPPVQVAT
GVLHGEKASARSSPALPERDLVTRPDSPPQQLKSPFQPVRDNSLAPQEGTPRILAALPSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH