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Report for CCDS26637.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26637.1 Public Mus musculus 13 Trip13 23 108 98 CCDS HistoryNCBI Gene:69716Re-query CCDS DB by CCDS ID:26637.1Re-query CCDS DB by GeneID:69716See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26637.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022053.10 ENSMUSP00000022053.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022053.10Link to Ensembl Protein Viewer:ENSMUSP00000022053.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000022053Re-query CCDS DB by Protein ID:ENSMUSP00000022053
Original member NCBI NM_027182.2 NP_081458.1 Updated not alive Link to Nucleotide Sequence:NM_027182.2Link to Protein Sequence:NP_081458.1Re-query CCDS DB by Nucleotide ID:NM_027182Re-query CCDS DB by Protein ID:NP_081458
Current member NCBI NM_027182.3 NP_081458.1 Accepted alive Link to Nucleotide Sequence:NM_027182.3Link to Protein Sequence:NP_081458.1Re-query CCDS DB by Nucleotide ID:NM_027182Re-query CCDS DB by Protein ID:NP_081458Link to BLAST:NP_081458.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081458.1 432 Q3UA06-1 432 100% 0 0

Chromosomal Locations for CCDS 26637.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 73913244 73913339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73914488 73914557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73915458 73915570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73918411 73918564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73919995 73920101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73920348 73920434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73921173 73921236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73927911 73927983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73929659 73929749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73930160 73930215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73932858 73932987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73936107 73936272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73937490 73937581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGGACGAGGCGGTGGGCGACCTGAAGCAAGCGCTTCCCTGTGTTGCCGAATCGCCCGCGGTCCATGTGG
AGGTTCTGCAGCGCAGCGGAAGCACTGCAAAAAAAGAAGATATAAAGTCGAGTGTTTACAGGCTGCTCAA
CCGGCATAATATTGTGTTTGGAGATTACGTCTGGACTGAGTTTGATGATCCTTTTCTAAGCAGAAATGTT
CAGTCAGTGTCTATTGTTGACACAGAACTAAAGGCTAAAGACCCTCAGCCCATTGATCTGAGTGCATGCA
CCATTGCACTTCACATCTTCCAGCTGAATGAAGAAGGCCCCAGCAGTGAGAATTTGGATGAAGAAACAGA
AAATATAATTGCAGCAAGTCACTGGGTTCTGCCTGCAGCTGAATTTCATGGACTTTGGGATAGCCTCGTG
TATGATGTGGAGGTCAAATCACATCTCCTTGATTATGTGATGACCACCGTACTCTTCTCAGACAAGAACG
TGGACAGCAACCTCATCACCTGGAACCGGGTGGTGCTGCTGCACGGTCCTCCGGGTACTGGAAAAACATC
CCTTTGTAAGGCATTAGCCCAAAAACTGACCATCAGACTGTCGAGCAGGTACCGGTATGGCCAGTTGATT
GAAATAAACAGCCACAGCCTATTTTCTAAGTGGTTTTCAGAAAGTGGCAAATTGGTAACTAAGATGTTCC
AGAAGATTCAGGACTTGATTGATGATAAGGAAGCTTTGGTGTTTGTTCTGATTGATGAGGTGGAGAGTCT
CACAGCTGCTCGAAATGCTTGCAGGGCAGGCGCAGAGCCATCAGATGCTATCCGAGTAGTCAATGCTGTG
TTGACTCAGATTGACCAGATTAAAAGGCATTCCAATGTGGTGATTCTGACCACTTCCAACATCACTGAGA
AGATTGATGTGGCTTTCGTGGATAGAGCTGACATCAAGCAATACATTGGCCCCCCCTCTGCAGCAGCCAT
CTTCAAAATCTACCTGTCTTGTTTAGAAGAACTGATGAAGTGCCAGATCATATATCCTCGTCAGCAGCTG
TTGACCCTTCGGGAGCTGGAAATGATTGGCTTCATTGAAAATAATGTGTCAAAGTTGAGCCTCCTTTTGA
GTGAAATTTCAAGGAAGAGTGAGGGCCTCAGTGGCCGGGTCTTGAGGAAACTTCCTTTCCTGGCTCATGC
TCTCTACATCCAGGCCCCCAGCGTCACCATCGAGGGTTTCCTCCAGGCCCTATCTCTGGCAGTGGACAAA
CAGTTTGAGGAGAAAAAGAAACTTTCAGCTTATGTTTGA

Translation (432 aa):
MDEAVGDLKQALPCVAESPAVHVEVLQRSGSTAKKEDIKSSVYRLLNRHNIVFGDYVWTEFDDPFLSRNV
QSVSIVDTELKAKDPQPIDLSACTIALHIFQLNEEGPSSENLDEETENIIAASHWVLPAAEFHGLWDSLV
YDVEVKSHLLDYVMTTVLFSDKNVDSNLITWNRVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLI
EINSHSLFSKWFSESGKLVTKMFQKIQDLIDDKEALVFVLIDEVESLTAARNACRAGAEPSDAIRVVNAV
LTQIDQIKRHSNVVILTTSNITEKIDVAFVDRADIKQYIGPPSAAAIFKIYLSCLEELMKCQIIYPRQQL
LTLRELEMIGFIENNVSKLSLLLSEISRKSEGLSGRVLRKLPFLAHALYIQAPSVTIEGFLQALSLAVDK
QFEEKKKLSAYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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