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Report for CCDS26717.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26717.2 Public Mus musculus 13 Tnpo1 23 108 98 CCDS HistoryNCBI Gene:238799Re-query CCDS DB by CCDS ID:26717.2Re-query CCDS DB by GeneID:238799See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 26717.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109401.7 ENSMUSP00000105028.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109401.7Link to Ensembl Protein Viewer:ENSMUSP00000105028.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109401Re-query CCDS DB by Protein ID:ENSMUSP00000105028
Original member NCBI NM_178716.3 NP_848831.2 Updated not alive Link to Nucleotide Sequence:NM_178716.3Link to Protein Sequence:NP_848831.2Re-query CCDS DB by Nucleotide ID:NM_178716Re-query CCDS DB by Protein ID:NP_848831
Current member NCBI NM_178716.4 NP_848831.2 Accepted alive Link to Nucleotide Sequence:NM_178716.4Link to Protein Sequence:NP_848831.2Re-query CCDS DB by Nucleotide ID:NM_178716Re-query CCDS DB by Protein ID:NP_848831Link to BLAST:NP_848831.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848831.2 898 Q8BFY9-1 898 100% 0 0

Chromosomal Locations for CCDS 26717.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 98846456 98846563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98847328 98847402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98849155 98849254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98850108 98850183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98852855 98852950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98853400 98853498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98855143 98855230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98855312 98855578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98856889 98856975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98858386 98858557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98859763 98859988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98860641 98860793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98863708 98863876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98864428 98864488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98864969 98865087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98867046 98867168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98870240 98870321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98875604 98875737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98878620 98878726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98884515 98884664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98888466 98888541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98890677 98890790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98926251 98926265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2697 nt):
ATGGTGTGGGACCGGCAAACCAAGATGGAGTATGAGTGGAAACCTGACGAGCAAGGGCTTCAGCAGATCC
TGCAGCTGCTCAAGGAGTCCCAGTCCCCAGACACCACCATCCAGAGGACCGTGCAACAAAAACTGGAACA
ACTCAATCAATATCCAGATTTTAACAACTACTTGATTTTTGTTCTTACAAAATTAAAATCTGAAGATGAG
CCCACACGGTCATTGAGCGGTCTGATCTTGAAGAACAATGTGAAAGCTCATTTTCAGAACTTCCCAAATG
GTGTGACAGACTTCATCAAGAGTGAATGTCTAAATAACATTGGGGACTCCTCTCCGTTGATCAGAGCCAC
TGTCGGTATTTTAATTACAACCATAGCCTCCAAGGGAGAGCTGCAGAATTGGCCTGATCTCTTACCAAAA
CTCTGTAGCCTGCTGGATTCCGAAGACTACAACACTTGTGAGGGAGCCTTCGGTGCCCTTCAGAAGATAT
GTGAGGACTCTGCAGAGATTTTAGACAGTGATGTCTTAGATCGCCCTCTCAACATCATGATCCCCAAGTT
TTTACAGTTTTTCAAGCACAGCAGTCCCAAAATAAGGTCTCATGCTGTTGCATGTGTCAATCAGTTCATC
ATCAGTCGGACCCAGGCGCTCATGCTGCACATCGATTCCTTCATTGAGAACCTCTTTGCACTGGCTGGCG
ACGAGGAAGCAGAGGTGCGGAAGAACGTGTGCCGGGCGCTTGTGATGTTGCTTGAAGTCCGGATGGATCG
CCTGCTTCCTCATATGCACAACATAGTCGAGTACATGCTGCAGAGAACCCAAGACCAAGATGAGAATGTA
GCTCTGGAGGCCTGTGAATTCTGGCTGACTTTGGCTGAACAGCCAATATGCAAAGATGTACTTGTAAGGC
ATCTACCAAAGTTGATTCCTGTGTTAGTGAATGGCATGAAGTACTCAGATATAGATATTATCCTGCTTAA
GGGTGATGTTGAGGAAGATGAGACCATCCCGGATAGTGAGCAGGATATACGGCCGCGGTTTCATCGCTCG
AGGACAGTGGCTCAGCAGCATGAGGAGGATGGGATTGAGGAGGAAGACGATGATGATGACGAAATTGATG
ATGATGACACGATTTCTGACTGGAACCTGAGAAAGTGTTCTGCTGCTGCTCTCGATGTTCTCGCAAATGT
TTATCGTGATGAGCTTTTGCCGCACATTCTGCCACTTTTGAAAGAATTGCTTTTCCATCATGAATGGGTT
GTGAAAGAATCTGGCATCTTGGTTTTAGGAGCAATTGCTGAAGGTTGTATGCAAGGCATGATTCCGTACC
TGCCCGAGCTCATTCCTCACCTTATTCAGTGCCTTTCTGATAAAAAGGCTCTTGTGCGTTCCATCACCTG
CTGGACTCTTAGCCGCTATGCACACTGGGTAGTCAGCCAGCCACCAGATACGTACCTGAAGCCATTAATG
ACAGAACTGCTGAAGCGTATCCTCGATAGCAACAAGAGAGTACAGGAAGCAGCTTGCAGTGCCTTCGCTA
CATTAGAAGAGGAGGCTTGTACAGAGCTCGTCCCTTACCTTGCTTATATACTCGATACCCTCGTCTTCGC
CTTCAGTAAATACCAGCATAAGAACCTGCTCATTCTGTACGACGCCATAGGGACACTGGCAGATTCAGTG
GGACATCATTTAAACAAGCCAGAATATATTCAGATGCTAATGCCTCCTTTGATCCAGAAATGGAACATGC
TGAAGGATGAAGACAAGGATCTTTTCCCTTTGCTTGAGTGTCTCTCGTCTGTTGCCACAGCCTTGCAGTC
TGGCTTCCTTCCATATTGTGAACCTGTATATCAGCGTTGCGTAAACCTAGTTCAGAAGACTCTGGCACAA
GCCATGCTAAACAATGCTCAACCAGAACAGTATGAAGCTCCAGATAAAGATTTTATGATTGTGGCTCTTG
ACTTACTCAGCGGCCTGGCTGAGGGCCTGGGAGGCAACATTGAGCAGCTGGTGGCCCGCAGTAACATCCT
GACGCTGATGTACCAGTGCATGCAGGATAAAATGCCCGAGGTTCGGCAGAGTTCTTTTGCATTGCTAGGT
GACCTGACTAAAGCGTGCTTCCAGCATGTTAAGCCTTGTATAGCTGATTTCATGCCAATATTGGGAACCA
ATCTAAATCCAGAGTTTATTTCAGTCTGCAACAATGCCACCTGGGCGATTGGGGAAATATCAATCCAAAT
GGGTATAGAGATGCAGCCCTACATCCCTATGGTGTTGCACCAGCTTGTGGAGATCATTAACAGACCCAAC
ACCCCAAAGACGCTGTTGGAGAACACAGCAATAACAATTGGTCGTCTTGGTTACGTTTGTCCTCAAGAGG
TGGCCCCCATGCTACAGCAGTTTATAAGACCCTGGTGTACCTCTCTGAGAAACATAAGAGACAATGAAGA
AAAAGATTCAGCATTCCGTGGGATTTGTACCATGATCAGTGTGAATCCCAGTGGCGTAATCCAAGATTTT
ATATTTTTTTGTGATGCTGTTGCATCATGGATTAACCCAAAAGATGATCTCAGAGACATGTTCTGTAAGA
TCCTTCATGGATTTAAAAACCAAGTTGGGGATGAAAATTGGAGGCGATTCTCTGACCAGTTTCCTCTTCC
CTTAAAAGAGCGTCTTGCAGCTTTTTATGGTGTTTAA

Translation (898 aa):
MVWDRQTKMEYEWKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDE
PTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPK
LCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFI
ISRTQALMLHIDSFIENLFALAGDEEAEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENV
ALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRS
RTVAQQHEEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWV
VKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLM
TELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSV
GHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQ
AMLNNAQPEQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLG
DLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPN
TPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDF
IFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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