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Report for CCDS26733.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26733.1 Public Mus musculus 13 Rad17 23 108 98 CCDS HistoryNCBI Gene:19356Re-query CCDS DB by CCDS ID:26733.1Re-query CCDS DB by GeneID:19356See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26733.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022136.13 ENSMUSP00000022136.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022136.13Link to Ensembl Protein Viewer:ENSMUSP00000022136.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000022136Re-query CCDS DB by Protein ID:ENSMUSP00000022136
Original member Current member EBI ENSMUST00000177848.2 ENSMUSP00000136292.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177848.2Link to Ensembl Protein Viewer:ENSMUSP00000136292.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177848Re-query CCDS DB by Protein ID:ENSMUSP00000136292
Original member Current member NCBI NM_001044371.2 NP_001037836.1 Accepted alive Link to Nucleotide Sequence:NM_001044371.2Link to Protein Sequence:NP_001037836.1Re-query CCDS DB by Nucleotide ID:NM_001044371Re-query CCDS DB by Protein ID:NP_001037836Link to BLAST:NP_001037836.1
Original member Current member NCBI NM_011233.3 NP_035363.2 Accepted alive Link to Nucleotide Sequence:NM_011233.3Link to Protein Sequence:NP_035363.2Re-query CCDS DB by Nucleotide ID:NM_011233Re-query CCDS DB by Protein ID:NP_035363Link to BLAST:NP_035363.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001037836.1 688 Q6NXW6 688 100% 0 0
NP_035363.2 688 Q6NXW6 688 100% 0 0

Chromosomal Locations for CCDS 26733.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 100617644 100617932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100619094 100619151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100622798 100622918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100624420 100624566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100627510 100627656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100627760 100627845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100629400 100629582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100631056 100631167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100632882 100632951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100633196 100633321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100633451 100633503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100633863 100633999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100636942 100637098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100643520 100643603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100644991 100645245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100649678 100649719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2067 nt):
ATGTCAGAAACTTTCCTTAGACCAAAGGTGTCTTCCACAAAGGTGACAGACTGGGTAGCTCCAGCCTTTG
AT
GACTTTGAGGCCAACACCGCCATCACCACCATCACTGCGTCATCTTTAACTTTCAGTAACTCCAGTCA
C
AGAAGAAAATATTTGCCCTCCACATTAGAAAGTAACAGATTGTCGGCTAGAAAAAGAGGAAGGCTCTCT
TTA
GAACAGACTCATGGTCTAGAAACTTCAAGAGAGCGTCTGTCCGACAATGAGCCGTGGGTGGATAAAT
AT
AAACCAGAAACTCAGCATGAACTTGCTGTTCATAAAAAGAAAATTGAAGAGGTCGAAACCTGGTTAAA
A
GCTCAAGTCTTAGAAGTGAAGCCAAAACAGGGTGGGTCTGTTTTATTAATAACAGGTCCTCCAGGATGT
GGA
AAGACAACTACTATAAAAATACTGTCAAAGGAACTTGGGATCCAAGTACAAGAATGGGTTAATCCTA
TT
TTACCAGACTTCCAAAAAGATGATTACAAGGAGTTACTTAGTTTAGAATCAAACTTCTCTGTAGTTCC
A
TACCAATCTCAGATAGCAGTCTTCAATGACTTTCTATTAAGAGCCACCAAGTACAGCAAACTGCAGATG
CTT
GGAGACGATCTGACAACTGATAAGAAGATCATTCTGGTGGAAGAGTTACCTAACCAGTTTTATCGAG
AC
CCTAACGCTTTACATGAGATTCTAAGAAAGCATGTGCAGATTGGCCGGTGTCCTCTTGTATTTATAGT
C
TCTGACAGTGTCAGTGGAGACAATAATCAGCGGCTACTCTTCCCCAGAAACATTCAAGAAGAGTGTTCT
GTT
TCAAACATTAGTTTCAACCCTGTGGCACCAACAATTATGATGAAATTTCTTAATCGAATTGTGACTA
TA
GAAGCTAGTAAGAATGGAGAAAAAATTATTGTTCCTAATAAAACTTCTCTGGAGTTGCTCTGTCAAGG
A
TGTTCTGGTGATATCAGAAGTGCAATAAACAGCCTGCAGTTCTCGTCTTCAAAAGGAGAGAACAGTTCG
TGG
TCAAAGAAGAAAAGAATGTCATTGAAATCGGATGCTGCCATATCAAAATCAAAACAAAAAAAGAAAC
AT
AATAGTACTTTGGAAAATCAAGAGATTCAAGCTATTGGTGGAAAAGATGTTTCTCTTTTTCTCTTCAG
A
GCTTTGGGGAAGATTCTGTACTGTAAAAGAGCGCCTTTAACAGAGTTAGACTCACCTCGCCTGCCTGCT
CAC
TTGTCAGAGCACGACCGGGACACTTTACTTGTTCAGCCTGAGGAAATAGTAGAAATGTCACACATGC
CA
GGAGACTTTTTTAATTTATACCTTCACCAAAACTACATAGATTTCTTCGCTGAAGTAGATGATCTTGT
G
CCAGCCAGTGAGTTTCTGAGTTTTGCAGATATCCTCGGTGGTGATTGGAATACACGCTCGTTACTCAGG
GAA
TATAGTACATCCGTAGCTACAAGAGGTGTGATGCATTCCAACAAAGCCCGGGGGTTCGCTCACTGCC
AA
GGAGGATCAAGCTTTCGACCCTTACATAAGCCCCAGTGGTTTCTAATACAGAAAAAGTATCGGGAAAA
T
TGCCTGGCAGCAAAAGCACTCTTTGTTGACTTCTGCCTACCAGCTTTGTGTCTCCAGACTCAGCTCTTG
CCA
TATCTTGCTCTTCTGACCATTCCAATGCGAAATAAAGCTCAGATTTCTTTTATCCAAGATGTTGGAA
GA
CTTCCTTTGAAGCGAAGCTTTGGAAGGTTGAAAATGGAAGCCCTGACTGACCGAGAGCTGGGGCTGAT
A
GACCCTGACAGTGGGGATGAGTCCCCGCACAGCGGAGGGCAGCCGGCTCAGGAAGCTCCCGGTGAACCC
GCG
CAGGCTGCTCAGAATGCCGACCCAGAGACCTGGTCCCTTCCGCTGAGTCAGAACAGCGGGAGCGATC
TG
CCTGCCAGCCAGCCTCAGCCCTTTTCCTCCAAAGTGGACATGGAAGAAGAGGAGGAGGAAGAGGAAGA
C
ATAATAATAGAGGACTATGACAGCGAGGAGACATAG


Translation (688 aa):
MSETFLRPKVSSTKVTDWVAPAFDDFEANTAITTITASSLTFSNSSHRRKYLPSTLESNRLSARKRGRLS
L
EQTHGLETSRERLSDNEPWVDKYKPETQ
HELAVHKKKIEEVETWLKAQVLEVKPKQGGSVLLITGPPGC
G
KTTTIKILSKELGIQVQEWVNPILPDFQKDDYKELLSL
ESNFSVVPYQSQIAVFNDFLLRATKYSKLQM
L
GDDLTTDKKIILVE
ELPNQFYRDPNALHEILRKHVQIGRCPLVFIVSDSVSGDNNQRLLFPRNIQEECS
V
SNI
SFNPVAPTIMMKFLNRIVTIEASKNGEKIIVPNKTSLELLCQGCSGDIRSAINSLQFSSSKGENSS
W
SKKKRMSLKSDAAISKSKQKKKHNSTLENQEIQAIGGKDVSLFLFRALGKILYCK
RAPLTELDSPRLPA
H
LSEHDRDTLLVQPE
EIVEMSHMPGDFFNLYLHQNYIDFFAEVDDLVPASEFLSFADILGGDWNTRSLLR
E
YSTSVATRGVMHSNKARGFAHCQGGSSFRPLHKPQWFLIQKK
YRENCLAAKALFVDFCLPALCLQTQLL
P
YLALLTIPMRNK
AQISFIQDVGRLPLKRSFGRLKMEALTDRELGLIDPDSGDESPHSGGQPAQEAPGEP
A
QAAQNADPETWSLPLSQNSGSDLPASQPQPFSSKVDMEEEEEEEEDIIIEDYDSEET




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser