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Report for CCDS26769.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26769.1 Public Mus musculus 13 Gpbp1 23 108 98 CCDS HistoryNCBI Gene:73274Re-query CCDS DB by CCDS ID:26769.1Re-query CCDS DB by GeneID:73274See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26769.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047627.13 ENSMUSP00000048240.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047627.13Link to Ensembl Protein Viewer:ENSMUSP00000048240.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000047627Re-query CCDS DB by Protein ID:ENSMUSP00000048240
Original member NCBI NM_028487.5 NP_082763.3 Updated not alive Link to Nucleotide Sequence:NM_028487.5Link to Protein Sequence:NP_082763.3Re-query CCDS DB by Nucleotide ID:NM_028487Re-query CCDS DB by Protein ID:NP_082763
Current member NCBI NM_028487.6 NP_082763.3 Accepted alive Link to Nucleotide Sequence:NM_028487.6Link to Protein Sequence:NP_082763.3Re-query CCDS DB by Nucleotide ID:NM_028487Re-query CCDS DB by Protein ID:NP_082763Link to BLAST:NP_082763.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082763.3 493 Q6NXH3-2 493 100% 0 0

Chromosomal Locations for CCDS 26769.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 111426493 111426651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111433548 111433650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111436397 111436584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111437957 111438124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111439104 111439244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111440632 111440816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111447896 111447955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111448933 111448999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111453024 111453247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111453373 111453496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111466851 111466913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1482 nt):
ATGGCGCAGCATGACTTTGCTCCAGCCTGGCTTAATTTTCCTACTCCTCCATCATCAACAAAGTCATCAT
TGAATTTTGAGAAGCACTCTGAAAATTTTTCATGGACAGAAAATCGTTATGATGTGAGTCGTCGACGACA
CAATTCTTCAGATGGCTTTGATTCTGGTATTGGACGTCCTAATGGAGGTAATTTTGGGAGGAAAGAGAAA
AATGGATGGCGTACGCATGGCAGAAATGGTACAGAAAACATAAATCATCGTGGGGGATACCATGGTGGAA
ATTCCCGTTCTCGTAGCAGTATTTTCCATTCTGGAAAAAGCCAAGGACTACATGAAAACAGCATCCCTGA
CAATGAAACTGGGAGGAAAGAAGACAAAAGAGAACGCAGACAGTTTGAGGCTGAGGATTTTCCATCTTTA
AATCCTGAATATGAGAGAGAACCAAATCAGAATAAATCTTTAGCTGCGGGTGTTTGGGGCCTACACGCCC
AGACACACACATACCCAACCAAAAAAATCTCCCAAGCTCCTCTCTTAGACTATCCCCCGAATCCTAAATC
TAGAACTCCAAGAATGCTGGTCATTAAGAAAGGTAATACAAAAGACTTACAGCTATCTGGATTCCCAGTA
GCAGGAAACCTCCAGTCACAGCCAGTTAAGAATGGAACTGGTCCAAGTGTTTATAAAGGCTTAGTCCCCA
AACCTGCTGTTCCACCTACAAAACCTACACAATGGAAAAGCCAAACTAAAGAAAACAAAGTCGGGACTTC
TTTTTCTCATGAATCTACATATGGTGTTGGCAACTTTAATACTTTTAAGTCAACGGCCAAGAATATTAGT
CCATCAACAAATTCAGTGAAAGAGTGTAATCGTTCAAATTCTTCTTCGCCTGTTGACAAACTTAATCAGC
AGCCTCGTTTAACTAAACTGACACGAATGCGCAGCGATAAAAAGAGTGAATTTTTGAAAGCATTGAAAAG
GGACAGAGTGGAGGAGGAACATGAAGATGAAAGTCATGCTGGCTCAGAGAAGGACGACGACTCATTTAAT
TTGCATAACAGCAATACTACTCACCAAGAAAGAGATATAAACAGAAACTTTGATGAAAATGAAATTCCAC
AGGAGAACGGCAATGCCTCGATGATTTCTCAACAGATCATTCGTTCTTCGACTTTTCCACAAACTGATGT
TCTTTCCAGTTCACTAGAGGCAGAACACAGATTATTAAAAGAAATGGGCTGGCAGGAAGACAGTGAAAAT
GATGAAACATGTGCTCCCTTAACTGAGGATGAAATGAGAGAATTCCAAGTTATTAGTGAACAGTTACAGA
AGAATGGTCTGAGAAAAAATGGTATTTTGAAAAATGGCCTGATCTGTGACTTCAAGTTTGGACCCTGGAA
AAACAGCACTTTCAAACCCACAATTGAGAATGATGACACAGAGACAAGTAGCAGCGACACGTCGGATGAT
GACGATGTGTGA

Translation (493 aa):
MAQHDFAPAWLNFPTPPSSTKSSLNFEKHSENFSWTENRYDVSRRRHNSSDGFDSGIGRPNGGNFGRKEK
NGWRTHGRNGTENINHRGGYHGGNSRSRSSIFHSGKSQGLHENSIPDNETGRKEDKRERRQFEAEDFPSL
NPEYEREPNQNKSLAAGVWGLHAQTHTYPTKKISQAPLLDYPPNPKSRTPRMLVIKKGNTKDLQLSGFPV
AGNLQSQPVKNGTGPSVYKGLVPKPAVPPTKPTQWKSQTKENKVGTSFSHESTYGVGNFNTFKSTAKNIS
PSTNSVKECNRSNSSSPVDKLNQQPRLTKLTRMRSDKKSEFLKALKRDRVEEEHEDESHAGSEKDDDSFN
LHNSNTTHQERDINRNFDENEIPQENGNASMISQQIIRSSTFPQTDVLSSSLEAEHRLLKEMGWQEDSEN
DETCAPLTEDEMREFQVISEQLQKNGLRKNGILKNGLICDFKFGPWKNSTFKPTIENDDTETSSSDTSDD
DDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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