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Report for CCDS26787.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
26787.1 |
Public |
Mus musculus |
13 |
Itga2 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:16398](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:26787.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:16398](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 13 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 26787.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000056117.9 |
ENSMUSP00000053891.8 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000056117.9](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000053891.8](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000056117](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000053891](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_008396.3 |
NP_032422.2 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_008396.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_032422.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_008396](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_032422](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_008396.4 |
NP_032422.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_008396.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_032422.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_008396](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_032422](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_032422.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_032422.2 |
1178 |
Q62469 |
1178 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 26787.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3537 nt): ATGGGACCGGGACAGGCAGGGGGCGCGCTCCTGCTGCGGCTGCTAATGCTAGTTCAAGGTATTTTGAATT GTCTGGCGTATAATGTTGGCCTCCCAGGAGCGAAAATATTTTCCGGGCCTTCAAGTGAACAGTTTGGGTA TTCAGTACAGCAGCTTACGAACCCACAAGGCAACTGGCTACTGGTTGGTTCACCGTGGAGTGGCTTCCCT GAGAACCGAATGGGAGATGTGTACAAGTGCCCTGTGGACCTACCCACTGCCACCTGTGAAAAGCTGAATC TGCAAAATTCAGCAAGCATCTCAAATGTTACCGAGATAAAGACCAACATGAGCCTGGGATTGACCCTCAC CAGGAATCCGGGGACCGGAGGCTTTCTAACCTGTGGTCCTCTCTGGGCACATCAGTGTGGAAATCAGTAT TATGCAACTGGGATCTGTTCTGATGTTAGTCCAGACTTTCAGTTCTTGACCAGCTTTTCACCTGCAGTTC AGGCTTGCCCTTCCCTCGTGGATGTTGTAGTTGTATGTGATGAATCAAACAGTATTTATCCTTGGGAAGC AGTAAAGAACTTTTTGGTAAAGTTTGTGACAGGCCTGGATATAGGACCTAAAAAGACACAGGTGGCGTTA ATTCAATATGCCAATGAGCCGAGAATTATATTTAACTTGAACGATTTCGAAACCAAAGAGGATATGGTCC AGGCCACATCTGAGACGCGCCAACATGGTGGGGACCTCACAAACACCTTCAGAGCTATCGAATTCGCAAG AGACTACGCTTATTCACAGACTTCTGGCGGGCGCCCGGGTGCTACAAAAGTCATGGTAGTTGTGACCGAT GGCGAGTCCCATGATGGGTCGAAGCTGAAAACTGTGATCCAGCAATGCAATGATGACGAGATACTGAGGT TCGGCATAGCAGTTCTTGGGTATTTAAACAGAAATGCTCTTGATACTAAAAATTTAATCAAAGAAATAAA AGCAATTGCTAGTACTCCAACCGAGAGATACTTTTTCAATGTGGCCGACGAAGCGGCTCTTCTGGAGAAG GCTGGAACTCTAGGGGAGCAAATATTCAGCATTGAAGGCACTGTTCAAGGAGGAGACAACTTCCAGATGG AAATGGCACAAGTTGGATTCAGTGCAGATTACGCTCCTCAAAATGATATTCTGATGTTAGGTGCAGTGGG GGCTTTTGACTGGAGTGGAACTCTTGTCCAGGAGACATCTCACAAGCCCGTGATCTTTCCTAAACAAGCC TTTGACCAGGTTCTGCAGGATAGAAACCACAGTTCGTTTTTAGGTTACTCTGTGGCTGCAATTTCTACTG AAGACGGTGTCCATTTTGTTGCTGGTGCTCCTCGAGCAAATTATACTGGCCAGATAGTGTTGTACAGCGT TAACAAGCAAGGCAATGTGACCGTGATTCAGTCTCACAGAGGGGACCAGATTGGCTCCTATTTTGGCAGT GTGCTGTGCTCAGTTGATGTAGATAAAGACACCATTACAGACGTGCTCCTGGTAGGTGCTCCTACATACA TGAACGACCTCAAGAAAGAAGAGGGAAAAGTCTACCTATTTACCATCACAAAGGGCATCTTGAATCAGCA CCAGTTTCTTGAAGGGCCAGAAGGCACTGGAAATGCTCGGTTTGGTTCAGCAATTGCAGCCCTGTCAGAC ATCAACATGGATGGCTTTAATGATGTGATTGTCGGTTCACCTGTAGAGAATGAGAACTCTGGAGCTGTGT ACATTTACAATGGTCACCAGGGTACCATTCGCACCAAGTACTCCCAGAAAATCCTTGGGTCCAATGGAGC CTTTAGGAGACATCTCCAGTTCTTTGGAAGGTCCCTGGATGGCTATGGTGATTTAAATGGGGATTCCATC ACTGATGTATCCATTGGTGCTTTGGGGCAAGTGATTCAACTCTGGTCACAAAGCATTGCTGACGTGGCCA TAGAAGCTTTGTTCACTCCAGACAAAATCACTTTGCTCAACAAGGATGCTAAGATAACCCTAAAGCTCTG CTTCAGAGCAGAGTTTAGACCTGCTGGGCAAAACAATCAAGTAGCCATCCTGTTTAACATGACGCTTGAT GCGGACGGACATTCATCCAGGGTAACCTCCAGGGGGGTGTTCAGAGAAAACAGTGAGCGATTCTTGCAGA AGAATATGGTGGTAAACGAAGTGCAGAAGTGTTCTGAGCACCACATTAGCATACAGAAGCCCTCTGATGT TGTCAACCCTTTGGATCTGCGTGTGGACATCAGTTTGGAAAACCCAGGCACTAGCCCTGCCCTCGAAGCC TATTCTGAAACTGTCAAAGTCTTCAGTATCCCTTTCTATAAGGAGTGTGGCAGCGATGGAATTTGCATCT CTGACCTGATCCTGGATGTCCAACAGCTGCCAGCCATTCAAACTCAATCCTTTATTGTCAGTAACCAAAA CAAGAGGTTAACATTTTCAGTCATCCTGAAAAACAGAGGGGAAAGTGCATACAACACTGTGGTCCTGGCC GAGTTTTCTGAGAACTTGTTTTTTGCTTCTTTCTCCATGCCGGTCGATGGAACAGAAGTAACATGTGAGG TTGGTTCATCGCAGAAATCTGTTACCTGTGATGTGGGATACCCTGCCTTAAAGAGTGAACAGCAGGTGAC TTTTACCATTAACTTCGACTTTAATCTTCAAAACCTCCAGAACCAGGCGGCCATCAATTTCCAAGCCTTC AGTGAGAGCCAAGAAACAAACAAAGCAGACAATTCGGTCAGTCTCACGATTCCTCTCCTGTATGATGCCG AACTTCACTTAACCCGATCCACCAACATCAACTTCTATGAGATCTCTTCGGATGAGAACGCTCCTTCTGT CATCAAGAGTGTCGAAGATATTGGTCCTAAATTCATCTTCTCCCTCAAGGTAACAGCCGGAAGTGCCCCA GTGAGCATGGCATTGGTGACTATCCACATTCCTCAGTACACCAAGGAAAAGAACCCACTCCTGTATCTGA CTGGGATACAAACAGACCAGGCTGGCGACATCAGCTGCACAGCAGAAATAAATCCACTCAAGCTACCACA CACCGCCCCTTCTGTATCTTTCAAGAATGAAAACTTCCGGCATACGAAAGAATTGGACTGCAGAACCACT TCCTGCAGTAACATCACCTGCTGGCTGAAAGACCTTCACATGAAAGCAGAGTACTTCATCAATGTGACAA CCAGAGTTTGGAACAGGACCTTTGCTGCTTCGACTTTCCAGACTGTGCAGCTGACAGCAGCGGCAGAGAT CGATACACATAACCCTCAGCTCTTCGTGATTGAGGAAAATGCTGTCACGATTCCCCTCATGATAATGAAA CCCACGGAGAAAGCAGAAGTACCGACAGGGGTTATCATAGGCAGCATAATTGCGGGAATCCTTTTGCTGT TGGCTATGACTGCAGGTTTGTGGAAGCTCGGCTTCTTCAAAAGACAATATAAGAAAATGGGCCAAAATCC AGATGAGATGGATGAGACCACAGAACTCAACAGCTAA
Translation (1178 aa): MGPGQAGGALLLRLLMLVQGILNCLAYNVGLPGAKIFSGPSSEQFGYSVQQLTNPQGNWLLVGSPWSGFP ENRMGDVYKCPVDLPTATCEKLNLQNSASISNVTEIKTNMSLGLTLTRNPGTGGFLTCGPLWAHQCGNQY YATGICSDVSPDFQFLTSFSPAVQACPSLVDVVVVCDESNSIYPWEAVKNFLVKFVTGLDIGPKKTQVAL IQYANEPRIIFNLNDFETKEDMVQATSETRQHGGDLTNTFRAIEFARDYAYSQTSGGRPGATKVMVVVTD GESHDGSKLKTVIQQCNDDEILRFGIAVLGYLNRNALDTKNLIKEIKAIASTPTERYFFNVADEAALLEK AGTLGEQIFSIEGTVQGGDNFQMEMAQVGFSADYAPQNDILMLGAVGAFDWSGTLVQETSHKPVIFPKQA FDQVLQDRNHSSFLGYSVAAISTEDGVHFVAGAPRANYTGQIVLYSVNKQGNVTVIQSHRGDQIGSYFGS VLCSVDVDKDTITDVLLVGAPTYMNDLKKEEGKVYLFTITKGILNQHQFLEGPEGTGNARFGSAIAALSD INMDGFNDVIVGSPVENENSGAVYIYNGHQGTIRTKYSQKILGSNGAFRRHLQFFGRSLDGYGDLNGDSI TDVSIGALGQVIQLWSQSIADVAIEALFTPDKITLLNKDAKITLKLCFRAEFRPAGQNNQVAILFNMTLD ADGHSSRVTSRGVFRENSERFLQKNMVVNEVQKCSEHHISIQKPSDVVNPLDLRVDISLENPGTSPALEA YSETVKVFSIPFYKECGSDGICISDLILDVQQLPAIQTQSFIVSNQNKRLTFSVILKNRGESAYNTVVLA EFSENLFFASFSMPVDGTEVTCEVGSSQKSVTCDVGYPALKSEQQVTFTINFDFNLQNLQNQAAINFQAF SESQETNKADNSVSLTIPLLYDAELHLTRSTNINFYEISSDENAPSVIKSVEDIGPKFIFSLKVTAGSAP VSMALVTIHIPQYTKEKNPLLYLTGIQTDQAGDISCTAEINPLKLPHTAPSVSFKNENFRHTKELDCRTT SCSNITCWLKDLHMKAEYFINVTTRVWNRTFAASTFQTVQLTAAAEIDTHNPQLFVIEENAVTIPLMIMK PTEKAEVPTGVIIGSIIAGILLLLAMTAGLWKLGFFKRQYKKMGQNPDEMDETTELNS
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