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Report for CCDS26849.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26849.1 Public Mus musculus 14 Synpo2l 23 108 98 CCDS HistoryNCBI Gene:68760Re-query CCDS DB by CCDS ID:26849.1Re-query CCDS DB by GeneID:68760See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26849.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057090.11 ENSMUSP00000053176.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057090.11Link to Ensembl Protein Viewer:ENSMUSP00000053176.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000057090Re-query CCDS DB by Protein ID:ENSMUSP00000053176
Original member Current member NCBI NM_175132.4 NP_780341.1 Accepted alive Link to Nucleotide Sequence:NM_175132.4Link to Protein Sequence:NP_780341.1Re-query CCDS DB by Nucleotide ID:NM_175132Re-query CCDS DB by Protein ID:NP_780341Link to BLAST:NP_780341.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780341.1 975 Q8BWB1 975 100% 0 0

Chromosomal Locations for CCDS 26849.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 20660301 20662465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20665744 20666258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20666648 20666799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20668100 20668195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2928 nt):
ATGGGTGCTGAGGAGGAGGTGCAGGTCACATTAGCAGGGGGAGCACCCTGGGGCTTCCGACTTCAGGGGG
GGACCGAACAGAGGAAACCTTTACAGATCCGAAGACGGAGCCAGGCTGGCAGAGCAGGACTCCGGGAGAG
GGACCAGCTCTTAGCGATCAACGGGGTTTCTTGCACCAACTTCTCCCATGCCAGTGCCATGACCCTCATC
GACGCCTCAGGGCGTCAACTTGTCCTTACTGTGAGGAGGGTAACAGATGAAGGGTCTGTGAGATCCCCAT
CCCCCGGAGAGCTACAGGTGCTATCACCCTTATCTCCACTGAGTCCTGAGCCCCCAGGTGCTCCTGTTTC
CCAGGCTCTTCAGCCCACAAGCCTTCGTTCACCCCCTGACAGCGAAGCTTACTATGGAGAGACAGATAGT
GATGTTGATGGCCCTGCCACACAAGAGAAGCCACGCCGAACCCGCCGCAGAGGTCCTGCAAGGCCTTCCC
TTCCAGGAGCCCCACCTGATGAGGTGTACCTGTCTGACAGCCCTGCAGAACCAGCACCTGTTAAAACTGG
CTCTCCCAGCCAGGGCGACAGCCGTGTAAGCTCCCCATCTTGGGAGGAAGGGGCAGCCCTTCAGCCCCCA
CCAGCAGAGGCACTTCTGTTACCCCATGGTCCACTCCGGCCTGGCCCTCATCTCATCCCTATGGTGGGCC
CTGTCCCCCACCCAGTGGCAGAAGATCTCACTACCACCTACACCCAGAAGGCCAAGCAAGCCAAACTGCA
ACGCGCAGAAAGCCTCCAGGAGAAAAGCGTAAAGGAGGCAAGAACCAAATGCCGGACCATTGCATCCCTG
CTAACAGCAGCCCCCAACCCTCACTCCAAGGGGGTGCTTATGTTTAAGAAGCGGCGGCAGAGAGCCAAGA
AGTACACCCTAGTGAGTTTTGGGGCCGCAGCTGGGACAGGAACAGAGGAGGAGGACGGCATCCCCCCAAC
GAGTGAGTCGGAGCTGGACGAGGAGACCTTCTCAGACGCCCGCAGCCTTACTAATCAATCCGACTGGGAC
AGCCCCTATCTAGACATGGAGCTGGCTAGGGCTGGCTTAGGCACAGCAGAGAGTCAGAACTCTGGACTGG
GAGGGCAGCTAAGTGAGGTCTCTGGGCGAGGGGTCCAGCTCTTTGAACAGCAGCGCCAGCGGGTAGCCTC
CAGCTCCCAGGAGCTGGCTCAGGTGGGCCCAGCAGCTATGCTTAATGGGCAGAGTCTGCAGTCCCCACCT
CGAGCACAGAGTGCTCCCCCAGAGGCAGCTGTGCTCCCACTCAGCCCTTTGTCGGTCCCTGCAGTCAGCC
CTACCCCCTTCTTCCCGGATGGTGGAGCCCCCATCCCTGCACCAAGTATCTTTAACAGGTCAGCGAGGCC
TTTTACCCCAGGTTTACAAGGGCAAAGGTCAGGTACCACCTCAGTGATTTTCCGGCCCTTGGCCCCTAAG
AAGGTGAATGAAGGCTTGGGGAGCACTAGCCCCGCCCCGTCCCCCTTCGCAGCCCCTCCACAGGGGCCCA
CCCCTCTGCCCAGCTTCACCACAGTGGTTCCCAGCCACACGCCGGTCTCTGGGGCTTCTAGCAGCACCCA
ACGCTCCTCTGGTCCTGTGACCGCTACCAGTTCCTTGTACATCCCAGCCCCAAGCCGGCCTGTTACACCA
GGAGGCGCCCCAGAACCGCCCACTCCTCCTAGCGCTGCTGCCATGACCTCCACCGCTTCCATCTTCTTGT
CCACTCCACTAAGAAACTCTGCGCGCCCGGAGGCGCCGGGCCCCGCGGTCCCCGAGCCTGCCAGCGTTCG
GGAGCAGCGCATCTCTGTGCCGGCTGCCCGCACCGGCATCCTGCAGGAGGCTAGGCGCCGGGGCACCCGC
AAGCAGATGTTCCGGCCTGGGAAGGAAGAGACGAAGAACTCGCCCAACCCGGAGCTGCTGTCACTAGTGC
AGAACCTGGATGAAAAACCTCGGGCGGGCGGTGCGGAATCTGGTCCGGAGGAGGACGCTTTAAGCCTCGG
GGCTGAAGCCTGTAACTTCATGCAGCCACTAGGGGGCAGGAGTTACAAGACCTTGCCTCAAGTATCACCG
AAAACCCCGCCTCCAATGGCTCCCAAAACTCCACCCCCTACAACGCCTAAGACTCCACCTCCCGTGGCTC
CTAAACCTGGGTCGCGAGGGCTCCTTGATGGGCTAGTGAATGGATCGACCCCGATGGTGGGAATCCCTGA
GCCGCCAAGGCTGCAAGGGAGGGGCGGGGAGCTATTTGCCAAACGGCAGAGCCGTGCCGATAGGTACGTG
GTGGAAGCTACATCTGGCTCTAGCCTTAATCCAGGCCTTCGCCCTAGAAGTCCTTCTCCCACACCCTCAC
TGCCCCCATCCTGGAAATACTCACCCAACATCCGTGCCCCACCTCCTATTGCTTACAACCCACTTCTCTC
ACCCTTTTTTCCCCAAGCTGCCCGAACTCTCCCCAATAAGGCTCAATCCCAGGGGCCTCGGGTGACCCCT
AAGCAGGGTATCAAGGCCCTGGATTTCATGCGACATCAGCCATACCAACTTAAAACGGCCATGTTTTGTT
TTGATGAGGGTTCTTCAACTCCTGGCCCCACTTCAGGGCCTCCCAAAACTGCCCGAGTTCAGGAGATCCG
CAGATTTTCCACTCCTGCACCCCAGCCCACTGCAGAGCCCTTGGCTCCCACTGTGCTTGTCCCCAGAGCG
GCTACCACCTTGGACGAACCCATTTGGAGGGCAGAGCTGGCCTCAACCCCTGTCCCTAACCCAGACCATC
AAGAGTCTCTCAGGAGCTTTGCTGCCGCTCCCAGTTCCTGTGGTTTCCAAGTAGCCAGGCCCCGGTTCTC
AGCCACCAGAACAGGGTTGCAGGCCCATGTCTGGAGGCCTGGGGCAGGGCACCAGTGA

Translation (975 aa):
MGAEEEVQVTLAGGAPWGFRLQGGTEQRKPLQIRRRSQAGRAGLRERDQLLAINGVSCTNFSHASAMTLI
DASGRQLVLTVRRVTDEGSVRSPSPGELQVLSPLSPLSPEPPGAPVSQALQPTSLRSPPDSEAYYGETDS
DVDGPATQEKPRRTRRRGPARPSLPGAPPDEVYLSDSPAEPAPVKTGSPSQGDSRVSSPSWEEGAALQPP
PAEALLLPHGPLRPGPHLIPMVGPVPHPVAEDLTTTYTQKAKQAKLQRAESLQEKSVKEARTKCRTIASL
LTAAPNPHSKGVLMFKKRRQRAKKYTLVSFGAAAGTGTEEEDGIPPTSESELDEETFSDARSLTNQSDWD
SPYLDMELARAGLGTAESQNSGLGGQLSEVSGRGVQLFEQQRQRVASSSQELAQVGPAAMLNGQSLQSPP
RAQSAPPEAAVLPLSPLSVPAVSPTPFFPDGGAPIPAPSIFNRSARPFTPGLQGQRSGTTSVIFRPLAPK
KVNEGLGSTSPAPSPFAAPPQGPTPLPSFTTVVPSHTPVSGASSSTQRSSGPVTATSSLYIPAPSRPVTP
GGAPEPPTPPSAAAMTSTASIFLSTPLRNSARPEAPGPAVPEPASVREQRISVPAARTGILQEARRRGTR
KQMFRPGKEETKNSPNPELLSLVQNLDEKPRAGGAESGPEEDALSLGAEACNFMQPLGGRSYKTLPQVSP
KTPPPMAPKTPPPTTPKTPPPVAPKPGSRGLLDGLVNGSTPMVGIPEPPRLQGRGGELFAKRQSRADRYV
VEATSGSSLNPGLRPRSPSPTPSLPPSWKYSPNIRAPPPIAYNPLLSPFFPQAARTLPNKAQSQGPRVTP
KQGIKALDFMRHQPYQLKTAMFCFDEGSSTPGPTSGPPKTARVQEIRRFSTPAPQPTAEPLAPTVLVPRA
ATTLDEPIWRAELASTPVPNPDHQESLRSFAAAPSSCGFQVARPRFSATRTGLQAHVWRPGAGHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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