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Report for CCDS26877.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26877.1 Public Mus musculus 14 Cphx1 23 108 98 CCDS HistoryNCBI Gene:105594Re-query CCDS DB by CCDS ID:26877.1Re-query CCDS DB by GeneID:105594See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26877.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000184016.2 ENSMUSP00000139237.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000184016.2Link to Ensembl Protein Viewer:ENSMUSP00000139237.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000184016Re-query CCDS DB by Protein ID:ENSMUSP00000139237
Original member Current member NCBI NM_175342.3 NP_780551.1 Accepted alive Link to Nucleotide Sequence:NM_175342.3Link to Protein Sequence:NP_780551.1Re-query CCDS DB by Nucleotide ID:NM_175342Re-query CCDS DB by Protein ID:NP_780551Link to BLAST:NP_780551.1

Chromosomal Locations for CCDS 26877.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 25942588 25942600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 25951916 25952118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 25954880 25954996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 25955090 25955305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (549 nt):
ATGCTTTCAAAAAATTTTCCTGGCGCTCCAGAAACAAAAGACAATCGCAGCAAAGCAAGAAAGCGATATG
GAAGCAGAAACTCAAAACCGAGACATAAATTTTCCAGAGATGAGCTGAAGAGACTTAAACAAGAATTTGC
ATACGCTCCTTACCCGGACTTCACCACCAAGGATGAGCTGGCCCGGCAGTTCCAGTGTGAAGTGAGCGTG
ATTGACAACTGGTTTCAGAATAAAAGAGCCAGATTGGCACCAGAATTGAAAAGCAAAATTTCTGCCATGA
GAAGAATGCGCAGGTGCCAAGACTACATGCGTACAGGTCACCAGGATACCCAGCCCCCAAAAGCTTCTGG
TGAACAGTACAGCTCATGTGACTCTGTGGTCCGAAGCATCGGAAGGCAATCAATTGGCACTGTGGAGCAT
CAAGGGGCCGCTGGAAGGGAATCTTCTTTCAGACCAACAAACTTTACTTTTCCCCCTGTGTATGAGCAGT
ATTATATGGGTGACCAGCTTGAGACACAGGAAACCCAATATTTCACATTCTCTTACTGA

Translation (182 aa):
MLSKNFPGAPETKDNRSKARKRYGSRNSKPRHKFSRDELKRLKQEFAYAPYPDFTTKDELARQFQCEVSV
IDNWFQNKRARLAPELKSKISAMRRMRRCQDYMRTGHQDTQPPKASGEQYSSCDSVVRSIGRQSIGTVEH
QGAAGRESSFRPTNFTFPPVYEQYYMGDQLETQETQYFTFSY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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