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Report for CCDS26880.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26880.1 Public Mus musculus 14 Slmap 23 108 98 CCDS HistoryNCBI Gene:83997Re-query CCDS DB by CCDS ID:26880.1Re-query CCDS DB by GeneID:83997See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26880.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038522.9 ENSMUSP00000046956.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038522.9Link to Ensembl Protein Viewer:ENSMUSP00000046956.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000038522Re-query CCDS DB by Protein ID:ENSMUSP00000046956
Original member Current member EBI ENSMUST00000102956.7 ENSMUSP00000100021.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102956.7Link to Ensembl Protein Viewer:ENSMUSP00000100021.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102956Re-query CCDS DB by Protein ID:ENSMUSP00000100021
Original member Current member NCBI NM_032008.4 NP_114397.3 Accepted alive Link to Nucleotide Sequence:NM_032008.4Link to Protein Sequence:NP_114397.3Re-query CCDS DB by Nucleotide ID:NM_032008Re-query CCDS DB by Protein ID:NP_114397Link to BLAST:NP_114397.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_114397.3 821 Q3URD3-2 821 100% 0 0

Chromosomal Locations for CCDS 26880.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 26416209 26416292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26418113 26418247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26422421 26422592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26426565 26426682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26427235 26427555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26428242 26428316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26429788 26429910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26438679 26438738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26438948 26439028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26442575 26442634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26459410 26459460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26459904 26459954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26460042 26460210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26462261 26462398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26463576 26463716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26465201 26465272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26465568 26465663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26468483 26468545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26470364 26470400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26473899 26473971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26482819 26482966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26533328 26533525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2466 nt):
ATGCCGTCAGCCTTGGCCATCTTCACTTGCCGCCCGAACTCGCACCCGTTTCAGGAGCGTCATGTCTACC
TGGACGAGCCCATCAAGATCGGCCGCTCGGTGGCACGCTGTCGACCAGCGCAGAATAATGCCACCTTTGA
TTGCAAAGTGCTGTCAAGGAACCATGCCCTCGTCTGGTTTGATCACAAGACGAGCAAGTTCTATCTCCAA
GACACTAAAAGTAGTAATGGTACCTTTATAAATAGCCAGAGATTGAGTCGAGGCTCTGAAGAAAGTCCGC
CATGCGAAATTCTTTCTGGTGACATCATCCAGTTTGGGGTGGATGTGACGGAGAATACCCGGAAAGTTAC
CCATGGGTGTATTGTTTCCACAATAAAACTTTTTCTACCAGATGGTATGGAAGCCCGACTTCGTTCAGAT
GTCATCCATGCTCCATTACCGAGTCCTGTAGACAAAGTTGCTGCTAACACTCCAAGTATGTACTCTCAGG
AACTATTCCAACTTTCTCAGTATCTACAGGAGGCCTTACATCGGGAACAGATGTTGGAACAGAAGTTAGC
CACACTTCAGCGGCTACTAGCCATCACCCAAGAGGCTTCAGATACTAGTTGGCAGGCTTTAATAGATGAA
GATAGACTCTTATCACGGTTAGAAGTTATGGGAAACCAGTTGCAGGCATGCTCCAAAAATCAAACAGAAG
ACAGTTTACGGAAGGAGCTGATTGCACTGCAGGAGGATAAACACAGCTATGAAACCACAGCCAAAGAGTC
CCTGAGGCGGGTTCTTCAGGAGAAAATCGAAGTGGTTAGAAAACTTTCAGAAGTTGAGCGAAGTCTGAGT
AATACTGAAGATGAATGTACCCACCTGAAAGAGATGAATGAGCGCACTCAGGAAGAGTTGAGAGAATTAG
CCAATAAATATAATGGAGCAGTTAATGAAATTAAAGATTTATCTGATAAATTAAAGGTAGCAGAGGGAAA
ACAAGAGGAAATCCAACAGAAGGGACAAGCTGAGAAGAAGGAATTACAGACGAAAATTGATGAAATGGAA
GAAAAAGAACAAGAGCTCCAGGCAAAAATCGAAGCTTTGCAAGCTGATAACGACTTCACCAATGAAAGGC
TGACAGCTCTGCAAGTACGGTTAGAACACCTGCAGGAGAAAACCCTTAAAGAATGCAGCAGCTTAGGGAT
ACAAGTTGATGACTTCTTACCTAAAATAAATGGGAGCACAGAAAAAGAGAAGCTGATGGTCCAAGGGCAT
CTAACCAAAGTGGTAGAAGAATCAAAGCTTTCAAAAGAAAATCAGGCAAAAGCAAAGGAATCCGACTTAT
CAGACACTCTGAGTCCAAGCAAGGAAAAAAGCAGCGACGACACTACAGACGCCCAGATGGATGAGCAAGA
CCTAAATGAACCCCTTGCTAAGGTGTCTCTATTAAAAGATGACTTACAGGGTACCCAGTCAGAAACTGAG
GCCAAACAAGACATTCAGCATCTTCGCAAAGAATTGGTGGAAGCCCAGGAGCTAGCTAGAACAAGTAAAC
AAAAATGCTTTGAACTTCAAGCTCTTTTGGAAGAAGAACGAAAAGCCTATCGAAATCAAGTTGAAGAATC
AGCTAAACAAATACAGGTTCTTCAAGTCCAGCTGCAGAAGTTACACATGGACATGGAGAATCTCCAGGAG
GAAAAGGACACGGAAATCTCCAGCACAAGAGATAAATTGCTTAGTGCCCAAGATGAGATTTTGCTCCTTC
GTCAAGCAGCAGCAGAGGCTGTGTCTGAGCGGGACACTGACTTTGTTTCTTTGCAAGAAGAGCTTAAGAA
GGTCAGAGCGGAGCTTGAGGGCTGGAGGAAAGCAGCGTCTGAATACGAGAATGAAATCAGAAGTCTGCAG
AGCAGCTTCCAGCTTAGATGTCAGCAGTGTGAAGACCAGCAAAGGGAGGAGGCAACAAGGTTGCAAGGTG
AGCTGGAGAAGTTGAAGAAGGAGTGGGATGTACTGGAAACGGAATGCCATTCTCTAAAAAAGGAGAACGT
GTTGTTGTCTTCAGAACTGCAGCGACAAGAGAAAGAATTGCACAATTCTCAGAAGCAGAGTTTTGAACTC
ACGAGTGACCTCAGCATCCTTCAGATGACTAGGAAAGAGCTGGAGAAGCAAGTGGGATCCTTGAAAGAAC
AACACCTTCGGGATGCAGCTGACCTAAAAACTCTCCTCAGTAAGGCTGAAAACCAAGCAAAGGATGTACA
GAAAGAGTATGAAAAGACACAGACTGTTCTCTCAGAACTGAAGTTGAAGTTTGAAATGACTGAGCAGGAA
AAGCAATCAATCACAGATGAGCTCAAACAGTGTAAAGACAACCTGAAGCTGCTGCGAGAGAAAGGAAATA
ATCCCTCCATATTACAACCTGTCCCAGCCGTTTTCATCGGCCTATTCCTGGCTTTCCTGTTTTGGTGTTT
CGGTCCATTGTGGTAG

Translation (821 aa):
MPSALAIFTCRPNSHPFQERHVYLDEPIKIGRSVARCRPAQNNATFDCKVLSRNHALVWFDHKTSKFYLQ
DTKSSNGTFINSQRLSRGSEESPPCEILSGDIIQFGVDVTENTRKVTHGCIVSTIKLFLPDGMEARLRSD
VIHAPLPSPVDKVAANTPSMYSQELFQLSQYLQEALHREQMLEQKLATLQRLLAITQEASDTSWQALIDE
DRLLSRLEVMGNQLQACSKNQTEDSLRKELIALQEDKHSYETTAKESLRRVLQEKIEVVRKLSEVERSLS
NTEDECTHLKEMNERTQEELRELANKYNGAVNEIKDLSDKLKVAEGKQEEIQQKGQAEKKELQTKIDEME
EKEQELQAKIEALQADNDFTNERLTALQVRLEHLQEKTLKECSSLGIQVDDFLPKINGSTEKEKLMVQGH
LTKVVEESKLSKENQAKAKESDLSDTLSPSKEKSSDDTTDAQMDEQDLNEPLAKVSLLKDDLQGTQSETE
AKQDIQHLRKELVEAQELARTSKQKCFELQALLEEERKAYRNQVEESAKQIQVLQVQLQKLHMDMENLQE
EKDTEISSTRDKLLSAQDEILLLRQAAAEAVSERDTDFVSLQEELKKVRAELEGWRKAASEYENEIRSLQ
SSFQLRCQQCEDQQREEATRLQGELEKLKKEWDVLETECHSLKKENVLLSSELQRQEKELHNSQKQSFEL
TSDLSILQMTRKELEKQVGSLKEQHLRDAADLKTLLSKAENQAKDVQKEYEKTQTVLSELKLKFEMTEQE
KQSITDELKQCKDNLKLLREKGNNPSILQPVPAVFIGLFLAFLFWCFGPLW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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