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Report for CCDS26940.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26940.1 Public Mus musculus 14 Ldb3 23 108 98 CCDS HistoryNCBI Gene:24131Re-query CCDS DB by CCDS ID:26940.1Re-query CCDS DB by GeneID:24131See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26940.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022328.13 ENSMUSP00000022328.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022328.13Link to Ensembl Protein Viewer:ENSMUSP00000022328.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000022328Re-query CCDS DB by Protein ID:ENSMUSP00000022328
Original member Current member NCBI NM_001039071.2 NP_001034160.1 Accepted alive Link to Nucleotide Sequence:NM_001039071.2Link to Protein Sequence:NP_001034160.1Re-query CCDS DB by Nucleotide ID:NM_001039071Re-query CCDS DB by Protein ID:NP_001034160Link to BLAST:NP_001034160.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034160.1 661 Q9JKS4-3 661 100% 0 0

Chromosomal Locations for CCDS 26940.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 34529460 34529549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34536565 34536680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34541868 34541988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34542427 34542607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34543973 34544417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34552177 34552322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34566857 34566893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34567398 34567567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34576986 34577344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34578595 34578670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34579176 34579327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34588377 34588469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1986 nt):
ATGTCTTACAGTGTGACTCTGACTGGGCCTGGGCCCTGGGGCTTCCGTCTGCAGGGAGGCAAGGACTTCA
ACATGCCCCTCACTATCTCCCGGATCACTCCAGGCAGCAAGGCAGCCCAGTCCCAGCTCAGCCAAGGAGA
CCTGGTGGTGGCCATTGATGGCGTCAACACAGACACCATGACCCACCTGGAGGCCCAGAACAAGATCAAG
TCGGCCAGCTACAACCTGAGCCTCACTCTACAGAAGTCCAAGCGGCCTATTCCCATCTCCACGACAGCGC
CTCCCATCCAGTCCCCGCTGCCAGTGATCCCCCACCAGAAGGACCCTGCTCTGGACACGAACGGCAGCCT
GGCGACTCCCAGCCCCAGCCCTGAGGCAAGGGCCAGCCCAGGCGCCCTGGAGTTCGGGGACACCTTTAGC
TCCTCCTTCTCCCAGACCTCTGTCTGCAGCCCACTCATGGAGGCCTCGGGGCCTGTCCTTCCTCTGGGTA
GCCCAGTGGCCAAGGCCAGCTCAGAGGGTGCACAGGGCTCAGTCAGCCCCAAAGTTCTGCCAGGCCCCAG
CCAACCGAGGCAATATAACAACCCCATTGGCCTGTACTCAGCAGAGACCCTGAGGGAGATGGCTCAGATG
TATCAGATGAGCCTCCGAGGGAAGGCCTCAGGTGCTGGACTCCTAGGAGGGAGCCTCCCTGTGAAAGACT
TGGCGGTGGACAGCGCCTCTCCTGTGTACCAGGCTGTGATCAAAACCCAAAGCAAGCCGGAAGATGAGGC
TGATGAGTGGGCCCGCCGGTCCTCCAACCTGCAGTCTCGCTCCTTCCGCATCCTGGCCCAGATGACCGGG
ACAGAATACATGCAAGACCCTGATGAAGAGGCTCTGCGAAGGTCAAGGCCACAGGCCTCTGCTTACAGTC
CTGCAGCCGCCGCTTCTCCAGCACCCTCTGCCCATACCAGCTACAGCGAGGGTCCAGCTGCCCCTGCACC
CAAGCCTCGGGTCGTAACCACTGCCAGCATCCGGCCTTCTGTCTACCAGCCAGTGCCTGCATCTTCCTAC
AGCCCATCTCCAGGAGCCAATTACAGTCCAACTCCCTATACCCCTTCGCCAGCTCCTGCTTATACCCCCT
CTCCTGCTCCCACCTATACCCCCTCACCTGCACCTACATACTCCCCTTCCCCTGCACCAGCTTATACCCC
CTCACCTGCCCCAAACTATACCCCTACACCATCAGCTGCCTACAGTGGGGGCCCTTCAGAATCTGCCAGC
CGTCCACCCTGGGTGACCGATGACAGCTTCTCTCAGAAGTTTGCTCCTGGAAAGAGCACTACCACTGTCA
GCAAGCAGACCCTGCCCCGGGGGGCTCCAGCCTACAACCCAACAGGTCCACAAGTGACACCTCTTGCCAG
GGGCACCTTCCAGAGAGCTGAGCGCTTCCCAGCTAGCAGCCGGACTCCCCTCTGTGGGCACTGTAACAAT
GTCATCAGGGGCCCTTTTCTGGTGGCCATGGGCCGCTCTTGGCACCCAGAAGAGTTCAATTGTGCCTACT
GCAAGACCTCCCTAGCAGATGTGTGCTTTGTGGAGGAGCAGAACAACGTTTACTGCGAGCGGTGTTACGA
GCAGTTCTTTGCCCCGATCTGTGCCAAATGTAACACCAAAATCATGGGGGAAGTGATGCACGCTCTGCGA
CAGACATGGCACACCACCTGCTTTGTCTGTGCAGCCTGCAAGAAGCCCTTTGGGAACAGCCTCTTCCACA
TGGAGGATGGAGAGCCATACTGTGAGAAAGACTACATCAACCTGTTCAGCACCAAGTGCCATGGATGCGA
TTTCCCTGTGGAAGCTGGTGACAAGTTTATCGAGGCCCTGGGGCACACCTGGCATGACACCTGCTTCATT
TGTGCGGTCTGCCACGTGAATCTGGAGGGTCAGCCATTCTACTCTAAGAAAGACAAACCACTGTGCAAGA
AGCACGCACATGCCATCAACGTGTAG

Translation (661 aa):
MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIK
SASYNLSLTLQKSKRPIPISTTAPPIQSPLPVIPHQKDPALDTNGSLATPSPSPEARASPGALEFGDTFS
SSFSQTSVCSPLMEASGPVLPLGSPVAKASSEGAQGSVSPKVLPGPSQPRQYNNPIGLYSAETLREMAQM
YQMSLRGKASGAGLLGGSLPVKDLAVDSASPVYQAVIKTQSKPEDEADEWARRSSNLQSRSFRILAQMTG
TEYMQDPDEEALRRSRPQASAYSPAAAASPAPSAHTSYSEGPAAPAPKPRVVTTASIRPSVYQPVPASSY
SPSPGANYSPTPYTPSPAPAYTPSPAPTYTPSPAPTYSPSPAPAYTPSPAPNYTPTPSAAYSGGPSESAS
RPPWVTDDSFSQKFAPGKSTTTVSKQTLPRGAPAYNPTGPQVTPLARGTFQRAERFPASSRTPLCGHCNN
VIRGPFLVAMGRSWHPEEFNCAYCKTSLADVCFVEEQNNVYCERCYEQFFAPICAKCNTKIMGEVMHALR
QTWHTTCFVCAACKKPFGNSLFHMEDGEPYCEKDYINLFSTKCHGCDFPVEAGDKFIEALGHTWHDTCFI
CAVCHVNLEGQPFYSKKDKPLCKKHAHAINV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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