NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, June 4, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27140.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27140.1 Public Mus musculus 14 Mcpt4 23 108 98 CCDS HistoryNCBI Gene:17227Re-query CCDS DB by CCDS ID:27140.1Re-query CCDS DB by GeneID:17227See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27140.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043249.9 ENSMUSP00000038103.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043249.9Link to Ensembl Protein Viewer:ENSMUSP00000038103.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000043249Re-query CCDS DB by Protein ID:ENSMUSP00000038103
Original member Current member NCBI NM_010779.2 NP_034909.2 Accepted alive Link to Nucleotide Sequence:NM_010779.2Link to Protein Sequence:NP_034909.2Re-query CCDS DB by Nucleotide ID:NM_010779Re-query CCDS DB by Protein ID:NP_034909Link to BLAST:NP_034909.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034909.2 246 P21812 246 98.7805% 0 3

Chromosomal Locations for CCDS 27140.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 56059957 56060100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56060496 56060750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56060935 56061070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56061574 56061724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56062220 56062274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (741 nt):
ATGCAGGCCCTACTATTCCTTATGGCACTTCTCTTGCCTTCTGGGGCTGGAGCTGAGGAGATTATTGGTG
GTGTTGAGTCTAGACCACATTCTCGCCCTTACATGGCCCATCTGGAGATCACCACTGAGAGAGGGTTCAC
AGCTACCTGTGGTGGGTTTCTCATAACCCGCCAATTTGTGTTGACTGCTGCACACTGTAGTGGAAGAGAA
ATCACTGTCACCCTTGGAGCTCATGATGTGAGCAAGACAGAATCCACACAGCAGAAGATAAAAGTAGAAA
AACAAATCGTTCACCCAAAGTACAACTTCTATTCCAATCTCCATGACATCATGTTGCTGAAGCTTCAAAA
GAAAGCCAAAGAGACTCCCTCTGTGAATGTAATTCCTCTGCCTCGTCCTTCTGACTTTATCAAGCCGGGG
AAGATGTGCCGGGCAGCTGGCTGGGGGCGAACTGGAGTGACAGAACCTACCTCAGATATACTGAGGGAGG
TGAAACTGAGAATCATGGATAAAGAGGCCTGTAAAAACTATTGGCATTACGACTATAACCTCCAGGTCTG
CGTGGGCAGTCCCAGAAAGAAAAGATCAGCATACAAGGGAGACTCTGGAGGACCTCTACTGTGTGCTGGG
GTGGCCCATGGTATTGTATCTTATGGACGCGGAGATGCAAAGCCCCCTGCAGTCTTCACCCGAATCTCCT
CATATGTGCCCTGGATTAACAGAGTTATAAAGGGCAAGTAG

Translation (246 aa):
MQALLFLMALLLPSGAGAEEIIGGVESRPHSRPYMAHLEITTERGFTATCGGFLITRQFVLTAAHCSGRE
ITVTLGAHDVSKTESTQQKIKVEKQIVHPKYNFYSNLHDIMLLKLQKKAKETPSVNVIPLPRPSDFIKPG
KMCRAAGWGRTGVTEPTSDILREVKLRIMDKEACKNYWHYDYNLQVCVGSPRKKRSAYKGDSGGPLLCAG
VAHGIVSYGRGDAKPPAVFTRISSYVPWINRVIKGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH