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Report for CCDS27205.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27205.1 Public Mus musculus 14 Pinx1 23 108 98 CCDS HistoryNCBI Gene:72400Re-query CCDS DB by CCDS ID:27205.1Re-query CCDS DB by GeneID:72400See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27205.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022528.5 ENSMUSP00000022528.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022528.5Link to Ensembl Protein Viewer:ENSMUSP00000022528.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000022528Re-query CCDS DB by Protein ID:ENSMUSP00000022528
Original member NCBI NM_028228.3 NP_082504.1 Updated not alive Link to Nucleotide Sequence:NM_028228.3Link to Protein Sequence:NP_082504.1Re-query CCDS DB by Nucleotide ID:NM_028228Re-query CCDS DB by Protein ID:NP_082504
Current member NCBI NM_028228.4 NP_082504.1 Accepted alive Link to Nucleotide Sequence:NM_028228.4Link to Protein Sequence:NP_082504.1Re-query CCDS DB by Nucleotide ID:NM_028228Re-query CCDS DB by Protein ID:NP_082504Link to BLAST:NP_082504.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082504.1 332 Q9CZX5 332 100% 0 0

Chromosomal Locations for CCDS 27205.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 63860429 63860447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 63864216 63864325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 63866103 63866195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 63868519 63868597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 63872302 63872394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 63878112 63878188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 63919097 63919624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGTCGATGCTAGCAGAGCGGCGGCGGAAGCAGAAATGGACTGTGGATCCCAGAAACACCGCGTGGAGTA
ACGATGATTCCAAGTTTGGCCAGAAGATGCTTGAGAAGATGGGGTGGTCTAAAGGAAAGGGTTTGGGAGC
TCAGGAGCAAGGAGCCACAGAACATATTAAAGTTAAAGTTAAAAATAACCACCTGGGACTTGGAGCTACA
AACAATAATGAAGACAACTGGATTGCTCACCAGGATGACTTCAACCAGCTTTTGGCAGCACTCAACACTT
GCCACGGTCAGGAAACAGCAGATTCCTCAGACAAAAAGGAAAAGAAATCTTTTAGCCTTGAAGAAAAATC
CAAAATCTCCAAAAACCGGGTTCATTATATGAAATTCACAAAAGGGAAGGATCTGTCCTCTCGGAGTGAA
ACCGACCTGGACTGCATTTTTGGAAAAAGGAGGAACAAGAAGCTTGCTCAGGATGGCTGCAGCAACTCCT
CTGCGGATGAGGTGAACACCTCCCTGACCACAACCACGACCACCACTAGTGCCTTCACCATCCAGGAATA
TTTTGCCAAGAGAATGGCCCAATTAAAGAACAAGCCACAAGCCTCAGCTCCAGGGTCTGACCTTTCAGAG
ACCCCTGTTGAAAGGAAAAAGGGAAAGAAAAAAAACAAAGAGGCAGCAGACACAGATGTAGAGAACTCTC
CCCAACACAAGGCCAAGAGGCATAAAAAGAAAAAGCGTGTGGAAGCAGAGAGGGGCCCTGTGGCCAAGAA
GAGAGACCGAGCAGAGCTGCAGCCTGGAGGCCCCAGTGAGGACGAGTGTTCCGATGCCTCTGTCGAAGCT
GCAGAAGATTGTGTACAAACACCAGACATCCAGGATGATGTCCCAAAGCCCAAGAAGAGGAAAGCAAAGA
AAAAGCTGCAAAGGCCAGAAGGAGTAGAAATAGACGCCACACTAGACAGAGCACCGGTGAAAAAGAAGAA
GAAGAAAGTTTCCAGATAA

Translation (332 aa):
MSMLAERRRKQKWTVDPRNTAWSNDDSKFGQKMLEKMGWSKGKGLGAQEQGATEHIKVKVKNNHLGLGAT
NNNEDNWIAHQDDFNQLLAALNTCHGQETADSSDKKEKKSFSLEEKSKISKNRVHYMKFTKGKDLSSRSE
TDLDCIFGKRRNKKLAQDGCSNSSADEVNTSLTTTTTTTSAFTIQEYFAKRMAQLKNKPQASAPGSDLSE
TPVERKKGKKKNKEAADTDVENSPQHKAKRHKKKKRVEAERGPVAKKRDRAELQPGGPSEDECSDASVEA
AEDCVQTPDIQDDVPKPKKRKAKKKLQRPEGVEIDATLDRAPVKKKKKKVSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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