NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27392.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27392.1 Public Mus musculus 15 6030458C11Rik 23 108 98 CCDS HistoryNCBI Gene:77877Re-query CCDS DB by CCDS ID:27392.1Re-query CCDS DB by GeneID:77877See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27392.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057256.4 ENSMUSP00000055656.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057256.4Link to Ensembl Protein Viewer:ENSMUSP00000055656.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000057256Re-query CCDS DB by Protein ID:ENSMUSP00000055656
Original member NCBI NM_029998.3 NP_084274.1 Updated not alive Link to Nucleotide Sequence:NM_029998.3Link to Protein Sequence:NP_084274.1Re-query CCDS DB by Nucleotide ID:NM_029998Re-query CCDS DB by Protein ID:NP_084274
Current member NCBI NM_029998.4 NP_084274.1 Accepted alive Link to Nucleotide Sequence:NM_029998.4Link to Protein Sequence:NP_084274.1Re-query CCDS DB by Nucleotide ID:NM_029998Re-query CCDS DB by Protein ID:NP_084274Link to BLAST:NP_084274.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084274.1 442 Q8BGC1-1 442 100% 0 0

Chromosomal Locations for CCDS 27392.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 12810712 12810844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12811933 12812072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12814191 12814257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12815850 12815971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12816320 12816382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12817858 12818284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12821404 12821553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12823561 12823706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12824467 12824547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1329 nt):
ATGAGTGACACCGGAGGCGACCGCGCGCGACTCAGGCGCTACACCAAGCTCCCGGTGTGGGTGGTGGAGG
ATCACCAGGAGGTTCTGCCTTTCATATACCGGGCCATAGGTTCGAAGCATCTTCCTGACAGTAATATAAG
TTTCTTACATTTGGACTCCCACCCAGACCTCCTTATCCCTGTGAACATGCCAGCAGACACTGTGTTTGAT
AAGGAAGCACTCTTTGGAGAACTGAGTATCGAAAATTGGATTATGCCTGCAGTTTACGCTGGCCATTTTT
CTCAAGTAATCTGGCTCCACCCCACGTGGGCCCAGCAAATCAGGGAGGGCAAGCACTGCTTCTTAGTAGG
CAAAGACATTTCTACCACAACCATCAGGGTTACAAGTACAGATTCTTACTTCCTAAGTGATGGTCTGTTT
GTACCTGAAGACCAGCTAGAGAACCGAAGGCCCTTACAGTTAGATGTGATTCTGGTAGAACCTTACACAC
TCTGTAGCAAACAAGATGACAGTGACTCTGTGTCTTCTACAAAGAAGCCCAAGCTGGCACTGGGAAGTGG
AGAGAGCAGCGCTGCGGCTGATGGGCACTCTTGCTCAGAAGGACGTCGAGGAGACGCAGTGACACCAAGA
AGTGACCATGCTTGCCAGGAGCCGTCCTGCTCACGTTCCGGAGGTCAGCAGAGCCAGAACACAGCCACCG
CTGGGGCGATTCTGGACATACTGAAGACGGGAGATGCGTTTGTTTTAGATATTGACTTGGATTTTTTTTC
TGTCAAAAACCCCTTCAAAGAAATGTTCACTCAGGATGAATACAAAATTCTACAGGAGCTTTACCAGTTT
AAAAAGCCTGATAGTAACCTTCCTGAGGATGGTTTGGTGGATGTTGTTGAGGCTCGAACCCATCAGTTGG
AAGATTTAGAAGCAGTCTTTGCTGACTTGTGTGACGGTGATAGTGAAGAAACCGTACAGAGCTGGGCTTC
AAACCCTGGGATGGAGTCACTAGTTCCACTTGTACAGAGTTTGAAAAAACGGATGGAAGTACCAGACTAT
GAAATGGTCCACCAGGCTGGGCTAACTTGCGATTATTCAGAACTTCCTCATCATATCAGCACAGAAGAAG
AAATTGAGTATCTTATTCAGTCTGTGTATTTTCTATTAAAAAGTCTACCAAAACCTACTCTTGTGACAAT
TGCAAGGTCAAGTCTGGATGATTACTGTCCTCCGGAACAAGTTGACATGATTCAGGGAAAGGTCCTCGAT
GTGCTGCACTCACTCTACGGGACCCTGGACACTCACCTGGTGTACTCAGAAGAGTCCCCTCTGAGCTGA

Translation (442 aa):
MSDTGGDRARLRRYTKLPVWVVEDHQEVLPFIYRAIGSKHLPDSNISFLHLDSHPDLLIPVNMPADTVFD
KEALFGELSIENWIMPAVYAGHFSQVIWLHPTWAQQIREGKHCFLVGKDISTTTIRVTSTDSYFLSDGLF
VPEDQLENRRPLQLDVILVEPYTLCSKQDDSDSVSSTKKPKLALGSGESSAAADGHSCSEGRRGDAVTPR
SDHACQEPSCSRSGGQQSQNTATAGAILDILKTGDAFVLDIDLDFFSVKNPFKEMFTQDEYKILQELYQF
KKPDSNLPEDGLVDVVEARTHQLEDLEAVFADLCDGDSEETVQSWASNPGMESLVPLVQSLKKRMEVPDY
EMVHQAGLTCDYSELPHHISTEEEIEYLIQSVYFLLKSLPKPTLVTIARSSLDDYCPPEQVDMIQGKVLD
VLHSLYGTLDTHLVYSEESPLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH