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Report for CCDS27403.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27403.1 Public Mus musculus 15 Otulinl 23 108 98 CCDS HistoryNCBI Gene:223433Re-query CCDS DB by CCDS ID:27403.1Re-query CCDS DB by GeneID:223433See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27403.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100739.4 ENSMUSP00000098305.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100739.4Link to Ensembl Protein Viewer:ENSMUSP00000098305.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100739Re-query CCDS DB by Protein ID:ENSMUSP00000098305
Original member NCBI NM_198301.2 NP_938043.1 Updated not alive Link to Nucleotide Sequence:NM_198301.2Link to Protein Sequence:NP_938043.1Re-query CCDS DB by Nucleotide ID:NM_198301Re-query CCDS DB by Protein ID:NP_938043
Current member NCBI NM_198301.3 NP_938043.1 Accepted alive Link to Nucleotide Sequence:NM_198301.3Link to Protein Sequence:NP_938043.1Re-query CCDS DB by Nucleotide ID:NM_198301Re-query CCDS DB by Protein ID:NP_938043Link to BLAST:NP_938043.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_938043.1 303 Q3TVP5-2 303 100% 0 0

Chromosomal Locations for CCDS 27403.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 27656898 27657071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 27658045 27658314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 27659890 27660018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 27664344 27664435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 27664537 27664568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 27664654 27664813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 27681397 27681451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (912 nt):
ATGGAGGCGCCGAGGAGCGCGCCGCGGGAGCGGGAGCGCGCTCGGACCACCTCAGGAAGTGACCAAGTTC
ACTCCTGGATACTAGTTACAAGCCAAGTCCTTAGTGCTGCCTGGAGAATAGCAAGGGCCTTTGTGATGAC
GACGCTCTCTCCTCTGTCCGCTACCTTCAGCTACTTCAGAAGCCTGTATTTATACTTAGGGCATCAGCTG
AAATGGTGGATCGGCTATCTACAGAGAAAGTTCAAAAGAAACCTCAGTGTGGAGGCAGAAGTAGATTTAC
TCAGTTATTGTGCAAGAGAGTGGAAGGGAGAAGCCCCGCGTGCCAGACTGATGCGGAAGCTTCCTGAAAA
ACTACTCTTTTCTCAAGGCTGTAACTGGATCCAGCAGTACAGTTTCGGGCCTGAGAAGTACACAGGTTCC
AATGTGTTTGGAAAGTTACGGAAATGTGTGGAGTTACTGAAACTGCAGTGGACTGAGTTTAGTGGGATGA
GAGATCACCACAAGAGAGGGAGCATGTGTAACAGCCTCTTCTCCGACGCCATCCTGGAGTGTAAACTGTA
CGAAGCTTTGAAGTTCCTCATGCTCTACCAGGTCACGGAAGCGTATGAGCAAATGAAGACCAACAAGGTT
ATCCCCAGCCTTTTCAGACTCCTGTTTTCCCGGGAGTCATCGCCGGATCCTTTGAGCTTCATGATGAATC
ACCTGAATTCCATAGGCGACACTTGTGGTTTGGATCAGATTGACATGTTTATACTCGGGTATTCTCTTCA
AGTAAAGATAAAAGTGTTTCGACTGTTCAAGTTTAACTCCAGAGACTTTGCAGTCTGCTACCCCGAGGAG
CCTCTCAGGGAGTGGCCAGAGATCTCCCTACTGACTGAGAATGGCCACCACTACCACATTCCCGTCTTTT
AA

Translation (303 aa):
MEAPRSAPRERERARTTSGSDQVHSWILVTSQVLSAAWRIARAFVMTTLSPLSATFSYFRSLYLYLGHQL
KWWIGYLQRKFKRNLSVEAEVDLLSYCAREWKGEAPRARLMRKLPEKLLFSQGCNWIQQYSFGPEKYTGS
NVFGKLRKCVELLKLQWTEFSGMRDHHKRGSMCNSLFSDAILECKLYEALKFLMLYQVTEAYEQMKTNKV
IPSLFRLLFSRESSPDPLSFMMNHLNSIGDTCGLDQIDMFILGYSLQVKIKVFRLFKFNSRDFAVCYPEE
PLREWPEISLLTENGHHYHIPVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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