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Report for CCDS27427.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27427.1 Public Mus musculus 15 Rnf19a 23 108 98 CCDS HistoryNCBI Gene:30945Re-query CCDS DB by CCDS ID:27427.1Re-query CCDS DB by GeneID:30945See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27427.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022890.9 ENSMUSP00000022890.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022890.9Link to Ensembl Protein Viewer:ENSMUSP00000022890.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000022890Re-query CCDS DB by Protein ID:ENSMUSP00000022890
Original member Current member NCBI NM_013923.2 NP_038951.1 Accepted alive Link to Nucleotide Sequence:NM_013923.2Link to Protein Sequence:NP_038951.1Re-query CCDS DB by Nucleotide ID:NM_013923Re-query CCDS DB by Protein ID:NP_038951Link to BLAST:NP_038951.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038951.1 840 P50636 840 100% 0 0

Chromosomal Locations for CCDS 27427.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 36241369 36242065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36244087 36244230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36245416 36245629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36247122 36247283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36247751 36247865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36253001 36253163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36254383 36254527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36260015 36260223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36265276 36265949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2523 nt):
ATGCAAGAACAAGAAATAAGTTTTATTTTTAAGTATAATGAAGGGCTGTGTATGAACATTGACTCTGACT
CAATTCTGATGAGCATTTTAGACATGAGTTTACATCAGCAAATGGGCTCAGATAGAGATCTTCAGTCTTC
TACTTCCTCCGTGAGCTTGCCTTCTGTCAAAAAGGCACCCAAACAGAGAAGGATTTCAATAGGCTCTCTC
TTTCGGAGGAAGAAGGACAGCAAACGAAAATCAAGGGAGCTCAATGGTGGAGTGGATGGAATTGCAAGTA
TTGAGAGTATACATTCTGAAATGTGTGCTGATAAGAACTCCATTTTCTCTACAAATACCTCTTCTGACAA
TGGATTGACTTCCATCAGCAAACAAATTGGAGACTTTATAGAATGTCCTTTGTGCCTTTTACGGCATTCT
AAAGACAGATTTCCTGATATAATGACATGCCACCATAGATCTTGTGTGGATTGCTTACGACAATACCTAA
GGATAGAAATCTCTGAAAGTAGAGTTAATATCAGTTGTCCAGAATGCACTGAACGGTTTAATCCTCATGA
CATTCGCTTGATATTAAGTGATGATGTCTTAATGGAAAAATATGAAGAATTTATGCTTCGACGGTGGCTT
GTTGCAGATCCTGACTGTAGGTGGTGTCCGGCTCCAGACTGTGGATACGCTGTGATAGCATTTGGATGTG
CCAGCTGTCCAAAACTAACTTGTGGGCGAGAAGGCTGTGGAACAGAGTTTTGCTACCACTGTAAACAGAT
CTGGCATCCAAACCAGACCTGTGATGCTGCTCGACAGGAAAGAGCCCAAAGTTTACGCTTAAGAACTATA
CGTTCTTCATCTATTAGTTACAGCCAGGAATCTGGAGCAGCAGCTGATGATATAAAGCCATGTCCACGAT
GTGCTGCTTATATAATAAAGATGAATGATGGGAGTTGCAATCATATGACATGTGCTGTCTGTGGTTGTGA
GTTTTGTTGGCTATGTATGAAAGAAATCTCCGATTTACATTATCTAAGTCCCTCAGGTTGTACTTTTTGG
GGGAAGAAACCCTGGAGCCGAAAGAAGAAAATCCTGTGGCAGCTGGGAACCCTTGTTGGTGCTCCCGTAG
GGATTGCTCTCATAGCTGGCATTGCCATTCCCGCCATGATCATTGGCATTCCTGTGTACGTGGGCCGCAA
GATTCATAATCGCTATGAAGGCAAAGATGTTTCAAAACATAAGCGGAATCTGGCCATAGCAGGCGGTGTC
ACCCTGTCTGTAATCGTGTCTCCGGTGGTAGCTGCAGTGACTGTAGGCATTGGTGTTCCCATCATGCTAG
CTTATGTCTATGGTGTGGTCCCAATTTCTCTCTGCCGAAGTGGGGGTTGTGGTGTCTCTGCGGGCAATGG
GAAAGGAGTGAGGATTGAGTTTGATGATGAGAATGACATAAACGTCGGTGGGACTAACGCAGCCATAGAT
ACAACATCAGTAGCAGAAGCAAGGCACAACCCTAGCATAGGAGAGGGAAGTGTCGGCGGCCTGACTGGCA
GTTTGAGTGCAAGTGGAAGCCACATGGATCGAATAGGCACCATTAGAGACAACCTGAGTGAGACAGCGAG
CACCATGGCATTAGCTGGAGCTAGTATCACGGGCAGTCTGTCGGGAAGTGCCATGGTAAACTGTTTCAAC
AGGTTGGAAGTACAAGCAGACGTACAGAAAGAACGGTGTAGTCTCAGTGGAGAGTCTGGCACAGTGAGCT
TGGGAACAGTTAGTGATAACGCCAGCACCAAAGCAATGGCGGGATCCATTCTCAACTCCTACATCCCTCT
GGACAGAGAAGGGAACAGCATGGAAGTGCAAGTGGATATTGAGTCAAAGCCATTCAAGTTCCGACACAAC
AGTGGAAGCAGCAGTGTGGATGACAGTGGTGCTACCCGAGGCCACACAGGCGGGGCGTCCAGTGGCTTGC
CCGAAGGTAAATCCAGTGCTACCAAGTGGTCCAAGGAAGCAACAGGAGGAAAAAAGTCAAAAAGTGGTAA
ACTGAGGAAAAAGGGTAACATGAAGATCAATGAGACCAGAGAGGACATGGATGCACAGTTGTTAGAGCAA
CAAAGCACGAACTCAAGTGAGTTTGAGGCGCCATCCCTCAGTGACAGCATGCCGTCTGTAGCAGATTCCC
ACTCCAGTCATTTTTCTGAATTTAGCTGCTCAGACTTAGAAAGCATGAGAACGTCCTGTAGTCACGGCTC
CAGTGATTGCCACGCCCGCTTCACAGCTGTGAACACCCTTCCTGAGGTAGAAAACGACCGACTGGAGAAC
TCACCACACCAGTGCAGCAGCGCTCTGCTTTCCAAAGCTGCTTCCTGTTCAGATGTCCCACAGCCCAGCC
ATGCTGCAGACGAGCATGGCACCAGCAGAAGTGGGGGGAAGCCTATGGTGGATTTGTGTTTTGGTGATGC
ACTGAGAGAGACAAATAATAACCACTCGCACCAGACAGCAGACCTGAAAGTTGCTGTCCAGACTGAAATT
TAG

Translation (840 aa):
MQEQEISFIFKYNEGLCMNIDSDSILMSILDMSLHQQMGSDRDLQSSTSSVSLPSVKKAPKQRRISIGSL
FRRKKDSKRKSRELNGGVDGIASIESIHSEMCADKNSIFSTNTSSDNGLTSISKQIGDFIECPLCLLRHS
KDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCPECTERFNPHDIRLILSDDVLMEKYEEFMLRRWL
VADPDCRWCPAPDCGYAVIAFGCASCPKLTCGREGCGTEFCYHCKQIWHPNQTCDAARQERAQSLRLRTI
RSSSISYSQESGAAADDIKPCPRCAAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFW
GKKPWSRKKKILWQLGTLVGAPVGIALIAGIAIPAMIIGIPVYVGRKIHNRYEGKDVSKHKRNLAIAGGV
TLSVIVSPVVAAVTVGIGVPIMLAYVYGVVPISLCRSGGCGVSAGNGKGVRIEFDDENDINVGGTNAAID
TTSVAEARHNPSIGEGSVGGLTGSLSASGSHMDRIGTIRDNLSETASTMALAGASITGSLSGSAMVNCFN
RLEVQADVQKERCSLSGESGTVSLGTVSDNASTKAMAGSILNSYIPLDREGNSMEVQVDIESKPFKFRHN
SGSSSVDDSGATRGHTGGASSGLPEGKSSATKWSKEATGGKKSKSGKLRKKGNMKINETREDMDAQLLEQ
QSTNSSEFEAPSLSDSMPSVADSHSSHFSEFSCSDLESMRTSCSHGSSDCHARFTAVNTLPEVENDRLEN
SPHQCSSALLSKAASCSDVPQPSHAADEHGTSRSGGKPMVDLCFGDALRETNNNHSHQTADLKVAVQTEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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