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Report for CCDS27532.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27532.1 Public Mus musculus 15 Ly6k 23 108 98 CCDS HistoryNCBI Gene:76486Re-query CCDS DB by CCDS ID:27532.1Re-query CCDS DB by GeneID:76486See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27532.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060301.5 ENSMUSP00000052599.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060301.5Link to Ensembl Protein Viewer:ENSMUSP00000052599.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000060301Re-query CCDS DB by Protein ID:ENSMUSP00000052599
Original member Current member EBI ENSMUST00000168815.7 ENSMUSP00000132129.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168815.7Link to Ensembl Protein Viewer:ENSMUSP00000132129.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168815Re-query CCDS DB by Protein ID:ENSMUSP00000132129
Original member Current member NCBI NM_029627.2 NP_083903.1 Accepted alive Link to Nucleotide Sequence:NM_029627.2Link to Protein Sequence:NP_083903.1Re-query CCDS DB by Nucleotide ID:NM_029627Re-query CCDS DB by Protein ID:NP_083903Link to BLAST:NP_083903.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083903.1 154 Q9CWP4 154 100% 0 0

Chromosomal Locations for CCDS 27532.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 74796964 74797271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74798535 74798633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74799419 74799476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (465 nt):
ATGGCGTTCCTAGTGGCCTTGCTCGTAGTTCTGGGCTTACAGTTGGTGCAGAGTAACGCGCTCACCTGCC
ATGTGTGTGAGGCGCAGAACAGCTATGCCTGCTCGAATCCGTCCCAGTGCCCTGGAGAAAAGAAATTCTG
TTTGTTGGCCGTCACACGAATTTTTGAACGTTTCTTCTATGTGTCGAAACAGTGCACCCGAAGGTGTCCA
ACCCCCGTAGTCAGCCCGCCTAGCACTAATCCACCATCTGAGCCTAAGGAGTTTCTGATAGAAAAACCCA
TGCCCTTCCTATTTTATAAGTGCTGTCAATGGGACTCATGTAATGGTGAGGGGCCACCCACTGACCAGCT
CTTAAAGGAACAACCTGGGAAAGCCAGTGGGAGAAGACATAGATACATTGAGCTGTTACTGACTGGCTTC
ATGGTCCTTACTGCTAATGGCCTCTCAGCCCTCTGCCTGCTGTAA

Translation (154 aa):
MAFLVALLVVLGLQLVQSNALTCHVCEAQNSYACSNPSQCPGEKKFCLLAVTRIFERFFYVSKQCTRRCP
TPVVSPPSTNPPSEPKEFLIEKPMPFLFYKCCQWDSCNGEGPPTDQLLKEQPGKASGRRHRYIELLLTGF
MVLTANGLSALCLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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