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Report for CCDS27556.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27556.1 Public Mus musculus 15 Zfp623 23 108 98 CCDS HistoryNCBI Gene:78834Re-query CCDS DB by CCDS ID:27556.1Re-query CCDS DB by GeneID:78834See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27556.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037260.7 ENSMUSP00000036049.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037260.7Link to Ensembl Protein Viewer:ENSMUSP00000036049.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000037260Re-query CCDS DB by Protein ID:ENSMUSP00000036049
Original member Current member NCBI NM_030199.3 NP_084475.1 Accepted alive Link to Nucleotide Sequence:NM_030199.3Link to Protein Sequence:NP_084475.1Re-query CCDS DB by Nucleotide ID:NM_030199Re-query CCDS DB by Protein ID:NP_084475Link to BLAST:NP_084475.1

Chromosomal Locations for CCDS 27556.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 75947197 75948696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1500 nt):
ATGATGTCAGACGAACTCACAGTGCTGGAGCCCTCTGCCTCTGAGTCTCGGGAATTTCATGAAGACAGAT
TGGCGCAGCTGTTGGGGAACCCAGACAAGCAGAGCTTGGAGAGTCCCTCCTCTCAGGACGGGGGCTTCAC
TCAGATGACAGTGACCCACTGGAAGATTCAAACAGGAGACACAGCCCAAACGTGCAGTAAGTCAGGAAGA
AACCCCATTCTCAATTCAAACCTTCTTATACTTCAGAGAGAACTCATAGATGCGGAGGCCCGTTCCTGTG
GTGGTGGTGGCAAAGGCTTCCCATTTAATTCAGATGTAGTTCCGCATCAGATCTCGCACACGGGGGAGAA
GCCTTACAAATGTGATCATTGTGGGAAAGGCTTCAGTCAGACCTCCCTCCTCACTGAACACCAGAGAGTC
CACACTGGGGACAGACTCTGTGTGTGCCACGTGTGCGGGAAAGACTTCGTTCACTACGCAAGCCTGAGGG
AGCATCAGCATGTCCATACTGGGGAAAAGCCGTTCAAGTGTGCACAGTGTGGAAAAGCATTTTGTCACAG
TTCAGACCTGCTTCGACACCAGAGGGTTCATACCAGGGAGAGGCCTTTTGAATGCAAAGAGTGTGGGAAG
GGTTTCAGTCAGAGCTCCTTACTCATTCGCCACCAAAGAATTCACACAGGAGAAAGGCCCTATGAGTGTA
ACGAGTGTGGGAAATCCTTCATTCGGAGTTCAAGCCTTATCCGCCATTACCAGATCCACACAGAAGTTAA
ACAGTATGAGTGCAGAGACTGCGGCAAAGCCTTCCGACACCGCTCGGACCTCATCGAGCACCAGAGGATT
CACACTGGAGAGCGGCCCTTCGAGTGTCAGGAGTGTGGGAAGGCCTTTATTCGGAGCTCGAAACTCATTC
AGCACCAGCGGATTCACACGGGAGAGCGGCCTTACGTGTGCAACGAGTGTGGGAAGCGTTTCAGTCAGAC
ATCCAACTTCACCCAGCACCAGCGAATCCACAGTGGAGAAAAACTCTATGAGTGTAACGAATGTGGGAAG
GCGTTCTTTCTGAGCTCATACCTCATACGACACCAGAAGATCCACACTGGTGAACGGGTGTATGAGTGTA
AGGAGTGTGGGAAGGCTTTCCTGCAGAAGGCCCACCTCACTGAGCATCAGAAGATCCACACTGGAGACAG
ACCCTTTGAGTGCAAAGACTGTGGGAAAGCCTTCATCCAGAGTTCTAAGCTATTGCTGCATCAGATTGTT
CATACCGGGGAGAAGCCCTATGTGTGCAGTTACTGCGGGAAAGGCTTTATTCAGAGATCCAACTTCCTTC
AGCACCAGAAGATGCACACGGAAGAGAAGCGCTACACGTATAGCCAACTTGGGAAAGATCTTACCCCACC
CCCAGATCTTGTCCACCAGGAGGATCTTTCCCTGAGTGAGACCTCCGTTCATTTAGGAGAGAGGTCTACA
GATCGGGAGTGTTGTGGAAATAATTTATAA

Translation (499 aa):
MMSDELTVLEPSASESREFHEDRLAQLLGNPDKQSLESPSSQDGGFTQMTVTHWKIQTGDTAQTCSKSGR
NPILNSNLLILQRELIDAEARSCGGGGKGFPFNSDVVPHQISHTGEKPYKCDHCGKGFSQTSLLTEHQRV
HTGDRLCVCHVCGKDFVHYASLREHQHVHTGEKPFKCAQCGKAFCHSSDLLRHQRVHTRERPFECKECGK
GFSQSSLLIRHQRIHTGERPYECNECGKSFIRSSSLIRHYQIHTEVKQYECRDCGKAFRHRSDLIEHQRI
HTGERPFECQECGKAFIRSSKLIQHQRIHTGERPYVCNECGKRFSQTSNFTQHQRIHSGEKLYECNECGK
AFFLSSYLIRHQKIHTGERVYECKECGKAFLQKAHLTEHQKIHTGDRPFECKDCGKAFIQSSKLLLHQIV
HTGEKPYVCSYCGKGFIQRSNFLQHQKMHTEEKRYTYSQLGKDLTPPPDLVHQEDLSLSETSVHLGERST
DRECCGNNL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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