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Report for CCDS27622.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27622.1 Public Mus musculus 15 Mfng 23 108 98 CCDS HistoryNCBI Gene:17305Re-query CCDS DB by CCDS ID:27622.1Re-query CCDS DB by GeneID:17305See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27622.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018313.5 ENSMUSP00000018313.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018313.5Link to Ensembl Protein Viewer:ENSMUSP00000018313.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000018313Re-query CCDS DB by Protein ID:ENSMUSP00000018313
Original member NCBI NM_008595.2 NP_032621.1 Updated not alive Link to Nucleotide Sequence:NM_008595.2Link to Protein Sequence:NP_032621.1Re-query CCDS DB by Nucleotide ID:NM_008595Re-query CCDS DB by Protein ID:NP_032621
Current member NCBI NM_008595.3 NP_032621.1 Accepted alive Link to Nucleotide Sequence:NM_008595.3Link to Protein Sequence:NP_032621.1Re-query CCDS DB by Nucleotide ID:NM_008595Re-query CCDS DB by Protein ID:NP_032621Link to BLAST:NP_032621.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032621.1 321 O09008 321 100% 0 0

Chromosomal Locations for CCDS 27622.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 78756578 78756644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78757297 78757382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78759193 78759358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78760806 78760891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78764315 78764468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78766818 78766920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78767142 78767190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78773018 78773272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGCACTGCCGACTTTTTCGGGGCATGGCGGGAGCCCTCTTTACCCTCCTGTGCGTGGGGCTCCTGTCTC
TACGATACCACTCAAGTTTGTCCCAGAGGATGATACAGGGCGCGCTCAGGCTGAACCAACGGAACCCAGG
ACCCCTGGAGCTGCAGCTAGGCGACATCTTCATCGCAGTCAAGACTACCTGGGCCTTCCATCGCTCCCGC
CTGGACCTGCTACTAGACACGTGGGTCTCCAGGATCAGGCAACAGACATTCATCTTCACTGACAGCCCAG
ATGAACGCCTCCAGGAGAGACTAGGCCCGCACCTCGTGGTCACCAACTGTTCTGCAGAGCACAGTCATCC
TGCTCTGTCCTGCAAGATGGCTGCAGAGTTCGATGCCTTCTTGGTCAGTGGCCTCAGGTGGTTCTGCCAC
GTGGATGATGACAACTATGTGAACCCCAAGGCTCTGCTGCAGCTGTTGAAAACATTCCCGCAGGACCGTG
ATGTCTATGTGGGCAAGCCCAGCCTGAACCGGCCCATCCACGCCTCTGAGCTGCAGTCAAAAAACCGCAC
GAAGCTGGTGCGGTTCTGGTTTGCCACAGGGGGTGCTGGTTTCTGCATCAACCGCCAACTGGCTTTGAAG
ATGGTGCCATGGGCCAGCGGCTCCCACTTTGTGGACACTTCTGCTCTCATCCGGCTCCCCGATGACTGCA
CTGTGGGCTACATCATCGAGTGCAAGCTGGGGGGTCGCCTGCAGCCCAGCCCCCTCTTCCACTCACACCT
GGAAACCCTGCAGCTGCTGGGGGCCGCCCAGCTTCCGGAGCAGGTCACCCTCAGCTACGGTGTCTTTGAG
GGGAAACTGAATGTCATCAAGCTACCGGGCCCCTTCTCCCATGAAGAGGACCCCTCCAGATTCCGCTCCC
TCCATTGTCTCCTCTACCCAGACACACCCTGGTGTCCGCTGCTGGCAGCGCCCTGA

Translation (321 aa):
MHCRLFRGMAGALFTLLCVGLLSLRYHSSLSQRMIQGALRLNQRNPGPLELQLGDIFIAVKTTWAFHRSR
LDLLLDTWVSRIRQQTFIFTDSPDERLQERLGPHLVVTNCSAEHSHPALSCKMAAEFDAFLVSGLRWFCH
VDDDNYVNPKALLQLLKTFPQDRDVYVGKPSLNRPIHASELQSKNRTKLVRFWFATGGAGFCINRQLALK
MVPWASGSHFVDTSALIRLPDDCTVGYIIECKLGGRLQPSPLFHSHLETLQLLGAAQLPEQVTLSYGVFE
GKLNVIKLPGPFSHEEDPSRFRSLHCLLYPDTPWCPLLAAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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