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Report for CCDS27730.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27730.2 Public Mus musculus 15 Brd1 23 108 98 CCDS HistoryNCBI Gene:223770Re-query CCDS DB by CCDS ID:27730.2Re-query CCDS DB by GeneID:223770See the combined annotation on chromosome 15 in Sequence Viewer

Public Note for CCDS 27730.1
The coding region has been updated to extend the C-terminus to one that is more supported by available transcript and homology data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 27730.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109381.8 ENSMUSP00000105007.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109381.8Link to Ensembl Protein Viewer:ENSMUSP00000105007.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109381Re-query CCDS DB by Protein ID:ENSMUSP00000105007
Original member Current member NCBI NM_001033274.3 NP_001028446.2 Accepted alive Link to Nucleotide Sequence:NM_001033274.3Link to Protein Sequence:NP_001028446.2Re-query CCDS DB by Nucleotide ID:NM_001033274Re-query CCDS DB by Protein ID:NP_001028446Link to BLAST:NP_001028446.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028446.2 1189 G5E8P1-2 1189 100% 0 0

Chromosomal Locations for CCDS 27730.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 88688297 88688480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88689509 88689663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88689862 88689971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88691208 88691335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88691749 88691884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88700773 88701270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88707034 88707294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88712616 88712928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88713298 88713426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88713886 88714017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88716906 88717062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88729324 88730690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3570 nt):
ATGAGGAGGAAAGGACGATGCCATCGAGGTTCTGCAGCGAGGCATCCTTCTTCCCCGTGCAGTATTAAAC
ACTCCCCCACTCGAGAAACACTGACCTACGCACAAGCTCAAAGGATGGTGGAGATAGAAATCGAAGGGCG
CTTGCATCGGATCAGTATTTTTGATCCCTTGGAGATCATACTAGAAGATGACCTCACTGCTCAGGAAATG
AGTGAATGTAACAGTAATAAGGAGAACAGCGAGAGGCCGCCTGTTTGCTTAAGAACTAAGCGTCACAAAA
ACAACAGAGTCAAAAAGAAAAATGAAGTCCTGCCCAGCACCCACGGCACACCGGCGTCAGCCAGTGCCCT
TCCCGAGCCCAAGGTGCGGATTGTGGAGTACAGTCCTCCCTCTGCACCCAGGAGGCCCCCTGTGTACTAC
AAGTTCATCGAGAAGTCAGCCGAGGAGCTGGACAACGAGGTAGAGTACGACATGGATGAGGAAGACTACG
CCTGGCTAGAGATCATCAATGAGAAGCGGAAGGGTGACTGCGTCTCTGCCGTGTCACAGAATATGTTTGA
GTTCCTGATGGACCGCTTCGAGAAGGAGTCTTACTGTGAGAACCAGAAGCAGGGTGAGCAGCAGTCCTTG
ATAGATGAGGACGCTGTTTGCTGCATCTGCATGGACGGGGAGTGCCAGAACAGCAACGTTATACTCTTCT
GTGACATGTGCAACCTGGCTGTGCACCAGGAGTGCTATGGGGTACCCTACATCCCCGAGGGCCAGTGGCT
TTGCCGCCACTGCCTGCAGTCTCGGGCCCGCCCTGCGGATTGCGTGCTGTGCCCGAATAAGGGCGGTGCC
TTCAAAAAGACAGACGATGACCGCTGGGGCCACGTGGTATGTGCCCTGTGGATCCCAGAGGTTGGCTTTG
CCAACACGGTATTCATTGAGCCCATTGACGGTGTGAGGAACATCCCTCCTGCCCGGTGGAAACTGACATG
CTACCTCTGTAAGCAGAAAGGCGTGGGTGCCTGCATTCAGTGCCACAAAGCAAATTGCTACACAGCATTC
CATGTGACATGTGCCCAGAAGGCTGGCCTATACATGAAGATGGAGCCTGTGAAGGAGCTGACTGGAGGCA
GCGCCACGTTCTCTGTCAGAAAGACTGCTTACTGTGATGTCCACACGCCTCCAGGCTGTACCCGGAGGCC
GTTGAACATTTATGGAGATGTTGAAATGAAAAATGGTGTGTGTCGAAAAGAAAGCTCAGTCAAAACGGTC
AGGTCTACGTCCAAGGTCAGGAAAAAAGCAAAAAAGGCTAAGAAAACACTGGCTGAGCCCTGTGCGGTCC
TGCCGACCGTGTGCGCTCCGTATATCCCCCCTCAGAGATTAAATAGGATTGCGAATCAGGTGGCCATTCA
GCGGAAGAAGCAGTTTGTGGAGCGAGCCCACAGCTACTGGTTGCTCAAAAGGCTGTCTAGGAATGGTGCT
CCCCTGTTGCGGCGGCTCCAGTCCAGCCTGCAGTCCCAGAGAAACACGCAGCAGAGAGAAAATGATGAAG
AGATGAAAGCTGCCAAAGAGAAGCTAAAGTACTGGCAGCGGCTGCGACATGACCTAGAGCGTGCACGCCT
GCTAATTGAGCTGCTGCGCAAGCGGGAGAAACTCAAGAGAGAGCAGGTGAAGGTGGAGCAGATGGCTATG
GAGCTCCGGCTGACGCCGCTAACTGTGCTGCTACGCTCAGTCCTGGAGCAGCTACAGGAGAAGGACCCTG
CAAAGATCTTTGCCCAGCCCGTGAGTCTCAAGGAGGTACCAGATTATTTGGATCACATTAAACACCCCAT
GGACTTTGCTACAATGAGGAAACGGCTAGAAGCTCAAGGGTATAAAAACCTCCATGCCTTTGAGGAGGAT
TTTAATCTCATTGTAGATAACTGCATGAAGTACAATGCCAAGGACACCGTGTTTTATAGAGCTGCAGTGA
GGCTGCGCGACCAGGGAGGGGTTGTCCTGAGGCAGGCCCGGCGAGAGGTGGAGAGCATTGGCCTGGAAGA
GGCCTCGGGAATGCACCTGCCTGAGCGACCCATCGCAGCCCCTCGGCGGCCCTTCTCCTGGGAAGAGGTG
GACAGGTTGCTGGACCCAGCCAACAGGGCCCACATGAGCTTGGAGGAGCAGCTGAGAGAACTTCTGGACA
AGTTGGACCTGACCTGCTCCATGAAGTCCAGCGGCTCACGGAGTAAACGGGCAAAGCTGCTTAAAAAAGA
GATTGCTCTTCTCCGAAACAAGCTGAGCCAGCAGCACAGCCAGGCTCCGCCCACAGGGGCAGGCACGGGA
GGCTTTGAAGATGAGGCTGCTCCACTGGCCCCGGACACAGCGGAGGAAGGAGCTAACTCTCCCCCTAAAC
TTGAACCATCAGATGCATTACCTCTTCCTTCAAACTCGGAGACTAACTCAGAACCACCAACCCTCAACCC
AGTAGAACTCCACCCCGAGCAGAGTAAACTATTCAAAAGAGTCACATTTGATAATGAATCACATAGCACT
TGCACTCAGAGCGCACTGGTAAGCGGACACCCTCCAGAGCCCACCCTCGCCAGTAGTGGCGATGTGCCGG
CGGCGGCGGCCTCCGCAGTGGCGGAGCCATCAAGCGATGTAAACAGACGCACTTCTGTTCTCTTCTGCAA
ATCGAAAAGTGTAAGCCCCCCAAAGTCTGCCAAGAACACTGAAACCCAGCCAACTTCTCCTCAGCTAGGG
ACCAAAACCTTTTTGTCTGTAGTCCTTCCGAGGTTGGAGACTCTACTGCAGCCAAGGAAAAGGTCGAGGA
GCACATGTGGAGACTCCGAAGTGGAGGAGGAGTCCCCGGGAAAGCGCCTGGACACAGGTCTCACCAATGG
CTTTGGGGGTGCTAGAAGCGAACAGGAGCCAGGAGGGGGCCCAGGGAGGAAAGCTGCGCCCCGGCGGCGC
TGTGCATCTGAATCCAGTATTTGTTCCAGCAACAGCCCACTCTGCGACTCAAGCTTTAGCACACCCAAGT
GTGGGCGAGGGAAACCTGCCCTTGTGCGAAGGCACACGCTAGAAGACCGAAGCGAGCTGATATCTTGTAT
TGAAAATGGAAACTACGCTAAGGCGGCCAGGATTGCAGCTGAGGTGGGCCAGAGCAACATGTGGATTTCC
ACTGACGCTGCTGCCTCCGTCCTGGAGCCCCTGAAGGTGGTATGGGCCAAGTGCAGCGGCTACCCCTCCT
ACCCAGCACTGATTATTGACCCCAAGATGCCACGAGTGCCTGGCCACCACAATGGCGTCACCATCCCTGC
GCCGCCGCTGGATGTGCTGAAGATCGGTGAACACATGCAGACCAAGTCCGAGGAGAAGCTCTTCCTTGTT
CTGTTTTTCGACAATAAGAGGAGCTGGCAGTGGCTTCCCAAGTCCAAGATGGTCCCTCTTGGTGTCGACG
AGACCATCGACAAGTTGAAAATGATGGAAGGGAGGAACTCTAGCATCCGGAAGGCTGTGCGGATTGCATT
TGATCGAGCCATGAATCATCTGAGCCGGGTCCATGGGGAGCCAGCCAGTGACCTCAGTGACATTGACTGA

Translation (1189 aa):
MRRKGRCHRGSAARHPSSPCSIKHSPTRETLTYAQAQRMVEIEIEGRLHRISIFDPLEIILEDDLTAQEM
SECNSNKENSERPPVCLRTKRHKNNRVKKKNEVLPSTHGTPASASALPEPKVRIVEYSPPSAPRRPPVYY
KFIEKSAEELDNEVEYDMDEEDYAWLEIINEKRKGDCVSAVSQNMFEFLMDRFEKESYCENQKQGEQQSL
IDEDAVCCICMDGECQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPADCVLCPNKGGA
FKKTDDDRWGHVVCALWIPEVGFANTVFIEPIDGVRNIPPARWKLTCYLCKQKGVGACIQCHKANCYTAF
HVTCAQKAGLYMKMEPVKELTGGSATFSVRKTAYCDVHTPPGCTRRPLNIYGDVEMKNGVCRKESSVKTV
RSTSKVRKKAKKAKKTLAEPCAVLPTVCAPYIPPQRLNRIANQVAIQRKKQFVERAHSYWLLKRLSRNGA
PLLRRLQSSLQSQRNTQQRENDEEMKAAKEKLKYWQRLRHDLERARLLIELLRKREKLKREQVKVEQMAM
ELRLTPLTVLLRSVLEQLQEKDPAKIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHAFEED
FNLIVDNCMKYNAKDTVFYRAAVRLRDQGGVVLRQARREVESIGLEEASGMHLPERPIAAPRRPFSWEEV
DRLLDPANRAHMSLEEQLRELLDKLDLTCSMKSSGSRSKRAKLLKKEIALLRNKLSQQHSQAPPTGAGTG
GFEDEAAPLAPDTAEEGANSPPKLEPSDALPLPSNSETNSEPPTLNPVELHPEQSKLFKRVTFDNESHST
CTQSALVSGHPPEPTLASSGDVPAAAASAVAEPSSDVNRRTSVLFCKSKSVSPPKSAKNTETQPTSPQLG
TKTFLSVVLPRLETLLQPRKRSRSTCGDSEVEEESPGKRLDTGLTNGFGGARSEQEPGGGPGRKAAPRRR
CASESSICSSNSPLCDSSFSTPKCGRGKPALVRRHTLEDRSELISCIENGNYAKAARIAAEVGQSNMWIS
TDAAASVLEPLKVVWAKCSGYPSYPALIIDPKMPRVPGHHNGVTIPAPPLDVLKIGEHMQTKSEEKLFLV
LFFDNKRSWQWLPKSKMVPLGVDETIDKLKMMEGRNSSIRKAVRIAFDRAMNHLSRVHGEPASDLSDID


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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