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Report for CCDS27767.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27767.1 Public Mus musculus 15 Pphln1 23 108 98 CCDS HistoryNCBI Gene:223828Re-query CCDS DB by CCDS ID:27767.1Re-query CCDS DB by GeneID:223828See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27767.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049122.15 ENSMUSP00000042762.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049122.15Link to Ensembl Protein Viewer:ENSMUSP00000042762.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000049122Re-query CCDS DB by Protein ID:ENSMUSP00000042762
Original member NCBI NM_146062.3 NP_666174.2 Updated not alive Link to Nucleotide Sequence:NM_146062.3Link to Protein Sequence:NP_666174.2Re-query CCDS DB by Nucleotide ID:NM_146062Re-query CCDS DB by Protein ID:NP_666174
Current member NCBI NM_146062.4 NP_666174.2 Accepted alive Link to Nucleotide Sequence:NM_146062.4Link to Protein Sequence:NP_666174.2Re-query CCDS DB by Nucleotide ID:NM_146062Re-query CCDS DB by Protein ID:NP_666174Link to BLAST:NP_666174.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666174.2 381 Q8K2H1-1 381 99.7375% 0 1

Chromosomal Locations for CCDS 27767.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 93410712 93410783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 93420284 93420490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 93424014 93424075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 93441501 93441712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 93452117 93452173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 93455451 93455530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 93459672 93459791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 93465105 93465245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 93488974 93489168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1146 nt):
ATGTGGTCTGAGGGACGCTATGACTACGACCGACTTCCGAGAGAACGCGTGCCTCCCCGGAGCCATCCCA
GTGATGGCTACCATAGAGTAGTTAATGTTGTGCCAAAGAGACCACCTCTGCTAGACAAGAGACCACCTCT
GCTAGACAAGAGACCACCTCTGCTAGCCAGACCTGATGAAGGAGGCTACAGTAGATATTACAGTCATGTT
GATTGCCGAGTATGTGACGAGGGCCGCAGTTTTTCTCATGATCGAAGAAGTGGCCCATCTCACAGTGGAG
ATGAATCTGGCTACAGATGGCTAAGAGATGATCATTCCACAAGCCGGCAGCCTGACTACAGGGACATGAG
AGACGGCTTCAGAAGAAAGAGTTTCTACTCTTCACATTATTCGAGAGATCGGTCTCCCCATAAAAGGGAC
GCTCCCTTCTTCAGAGAATCCCCTGTCGGCCGGAAGGACTCCCCACACAGCAGATCCGGCTCCAGTGTCA
GCAGCAGAAGCTATTCTCCAGAGCGAAGCAGGACTCACTCCTTCCATCAGTCTCAGCATAGAAAGTCCTC
GCGTGTCGGTGCTTCCTACAAACGACAGAATGAAGCAATTCGTGGAAGAGGTAAAGAGAGATCCATCCAG
TCAGTGAAAACCTCGAGAGATGCGTCACCCTCAAGTTCCTCAGCAGTTGCTTCATCCAAGGCGTTAGACA
AACCCAGCAGGCTAACTGAGAAGGAACTTGCTGAGGCTGAAAGCAAGTGGGCTAATGAAACACTAGAGAA
GTCAGACGAAAGTAACTTGGCTGAAATGAATGAGTTTGAGGCGGGATCCACGGCACCCTTATTTATTGAC
CAGACAGAAGAACCCGAGTCAAACACAGTAGATGGTACAGAACTGTATGAAGACAGCCAGCTCAGCAACC
GCTCTAAAGCCATTGCCTCGAAAACCAAAGAGATTGAGCAGGTTTACCGACAAGACTGCGAGACTTTCGG
GATGGTGGTGAAAATGCTGATTGAAAAAGATCCCTCATTAGAAAAGTCTGTCCAGTTTGCACTGAGGCAG
AACTTACACGAGATAGGTGAGCGCTGCGTGGAAGAGCTCAAGCGTTTCATTACTGAGTATGACAACTCTG
CTCAGGACTTTGGAGACCCCTTTTAG

Translation (381 aa):
MWSEGRYDYDRLPRERVPPRSHPSDGYHRVVNVVPKRPPLLDKRPPLLDKRPPLLARPDEGGYSRYYSHV
DCRVCDEGRSFSHDRRSGPSHSGDESGYRWLRDDHSTSRQPDYRDMRDGFRRKSFYSSHYSRDRSPHKRD
APFFRESPVGRKDSPHSRSGSSVSSRSYSPERSRTHSFHQSQHRKSSRVGASYKRQNEAIRGRGKERSIQ
SVKTSRDASPSSSSAVASSKALDKPSRLTEKELAEAESKWANETLEKSDESNLAEMNEFEAGSTAPLFID
QTEEPESNTVDGTELYEDSQLSNRSKAIASKTKEIEQVYRQDCETFGMVVKMLIEKDPSLEKSVQFALRQ
NLHEIGERCVEELKRFITEYDNSAQDFGDPF


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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