NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27772.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27772.1 Public Mus musculus 15 Irak4 23 108 98 CCDS HistoryNCBI Gene:266632Re-query CCDS DB by CCDS ID:27772.1Re-query CCDS DB by GeneID:266632See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27772.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074936.9 ENSMUSP00000074471.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074936.9Link to Ensembl Protein Viewer:ENSMUSP00000074471.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000074936Re-query CCDS DB by Protein ID:ENSMUSP00000074471
Original member Current member NCBI NM_029926.5 NP_084202.2 Accepted alive Link to Nucleotide Sequence:NM_029926.5Link to Protein Sequence:NP_084202.2Re-query CCDS DB by Nucleotide ID:NM_029926Re-query CCDS DB by Protein ID:NP_084202Link to BLAST:NP_084202.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084202.2 459 Q8R4K2 459 100% 0 0

Chromosomal Locations for CCDS 27772.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 94547843 94548003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 94551803 94551948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 94553835 94554017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 94554686 94554846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 94556627 94556691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 94558250 94558364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 94558769 94558878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 94561446 94561629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 94563018 94563080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 94566739 94566897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 94567014 94567046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1380 nt):
ATGAACAAGCCGTTGACACCATCGACATACATACGCAACCTTAATGTGGGGATCCTTAGGAAGCTGTCGG
ATTTTATTGATCCTCAAGAAGGGTGGAAGAAATTAGCAGTAGCTATCAAAAAGCCGTCCGGCGACGACAG
ATACAATCAGTTCCATATAAGGAGATTCGAAGCCTTACTTCAGACCGGGAAGAGCCCCACCTGTGAACTG
CTGTTTGACTGGGGCACCACGAACTGCACAGTTGGCGACCTTGTGGATCTACTGGTCCAGATTGAGCTGT
TTGCCCCCGCCACTCTCCTGCTGCCGGATGCCGTTCCCCAAACCGTCAAAAGCCTGCCTCCTAGAGAAGC
GGCAACAGTGGCACAAACACACGGGCCTTGTCAGGAAAAGGACAGGACATCCGTAATGCCTATGCCGAAG
CTAGAACACAGCTGCGAGCCACCGGACTCCTCAAGCCCAGACAACAGAAGTGTAGAGTCCAGCGACACTC
GGTTCCACAGCTTCTCGTTCCATGAACTGAAGAGCATCACAAACAACTTCGACGAGCAACCCGCGTCTGC
CGGTGGCAACCGGATGGGAGAGGGGGGATTTGGAGTGGTGTACAAGGGCTGTGTGAACAACACCATCGTG
GCGGTGAAGAAGCTCGGAGCGATGGTTGAAATCAGTACTGAAGAACTAAAGCAACAGTTTGATCAAGAAA
TTAAAGTAATGGCAACGTGTCAGCACGAGAACCTGGTGGAGCTGCTCGGCTTCTCCAGCGACAGCGACAA
CCTGTGCTTAGTGTATGCTTACATGCCCAACGGGTCCTTGCTGGACAGACTGTCCTGCCTGGATGGTACA
CCACCGCTTTCCTGGCACACAAGGTGCAAGGTTGCTCAGGGGACAGCAAATGGCATCAGGTTTCTGCATG
AAAATCATCACATTCATAGAGATATTAAAAGTGCAAATATCTTACTAGACAAAGACTTTACTGCCAAAAT
ATCTGACTTTGGGCTTGCACGGGCTTCGGCAAGGCTAGCGCAGACGGTCATGACCAGCCGAATCGTGGGC
ACAACGGCTTACATGGCACCCGAAGCTTTGCGGGGAGAAATAACACCCAAATCTGACATCTACAGCTTCG
GCGTGGTTCTGTTGGAGCTGATAACCGGGCTGGCGGCTGTGGATGAAAACCGTGAACCTCAACTACTGCT
GGATATTAAAGAAGAGATTGAAGATGAAGAGAAGACGATTGAAGATTACACGGATGAGAAGATGAGCGAT
GCGGACCCTGCTTCGGTGGAAGCAATGTACTCTGCTGCTAGCCAGTGTCTGCATGAGAAGAAAAACAGAC
GGCCAGACATTGCAAAGGTTCAACAGCTGCTACAAGAGATGTCTGCTTAA

Translation (459 aa):
MNKPLTPSTYIRNLNVGILRKLSDFIDPQEGWKKLAVAIKKPSGDDRYNQFHIRRFEALLQTGKSPTCEL
LFDWGTTNCTVGDLVDLLVQIELFAPATLLLPDAVPQTVKSLPPREAATVAQTHGPCQEKDRTSVMPMPK
LEHSCEPPDSSSPDNRSVESSDTRFHSFSFHELKSITNNFDEQPASAGGNRMGEGGFGVVYKGCVNNTIV
AVKKLGAMVEISTEELKQQFDQEIKVMATCQHENLVELLGFSSDSDNLCLVYAYMPNGSLLDRLSCLDGT
PPLSWHTRCKVAQGTANGIRFLHENHHIHRDIKSANILLDKDFTAKISDFGLARASARLAQTVMTSRIVG
TTAYMAPEALRGEITPKSDIYSFGVVLLELITGLAAVDENREPQLLLDIKEEIEDEEKTIEDYTDEKMSD
ADPASVEAMYSAASQCLHEKKNRRPDIAKVQQLLQEMSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH