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Report for CCDS27800.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27800.1 Public Mus musculus 15 Cacnb3 23 108 98 CCDS HistoryNCBI Gene:12297Re-query CCDS DB by CCDS ID:27800.1Re-query CCDS DB by GeneID:12297See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27800.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000230490.1 ENSMUSP00000155514.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000230490.1Link to Ensembl Protein Viewer:ENSMUSP00000155514.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000230490Re-query CCDS DB by Protein ID:ENSMUSP00000155514
Original member NCBI NM_007581.3 NP_031607.2 Updated not alive Link to Nucleotide Sequence:NM_007581.3Link to Protein Sequence:NP_031607.2Re-query CCDS DB by Nucleotide ID:NM_007581Re-query CCDS DB by Protein ID:NP_031607
Current member NCBI NM_007581.4 NP_031607.2 Accepted alive Link to Nucleotide Sequence:NM_007581.4Link to Protein Sequence:NP_031607.2Re-query CCDS DB by Nucleotide ID:NM_007581Re-query CCDS DB by Protein ID:NP_031607Link to BLAST:NP_031607.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031607.2 484 P54285-1 484 100% 0 0

Chromosomal Locations for CCDS 27800.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 98635169 98635213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98639488 98639610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98639814 98639936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98640339 98640454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98640686 98640750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98640959 98640978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98641177 98641257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98641400 98641458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98641616 98641725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98641939 98642090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98642309 98642404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98642502 98642651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98643257 98643571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1455 nt):
ATGTATGACGACTCCTACGTGCCCGGGTTTGAGGACTCGGAGGCGGGTTCAGCCGACTCCTACACCAGCC
GCCCCTCTCTGGACTCAGACGTCTCCCTGGAGGAGGACCGGGAGAGTGCCCGGCGAGAAGTGGAGAGTCA
GGCTCAGCAGCAGCTGGAAAGAGCCAAGCACAAACCTGTGGCATTTGCTGTGAGGACCAATGTCAGCTAC
TGTGGGGTTCTGGATGAGGAGTGCCCGGTCCAGGGCTCTGGAGTCAACTTTGAGGCCAAAGATTTTCTGC
ACATTAAAGAGAAGTACAGCAATGACTGGTGGATCGGGAGGCTAGTGAAAGAGGGCGGAGACATCGCCTT
CATCCCCAGCCCCCAACGCCTGGAGAGCATCCGGCTCAAACAGGAACAGAAGGCCAGGAGATCTGGGAAC
CCTTCCAGCCTGGGTGACATTGGCAACCGACGCTCTCCTCCTCCGTCTCTAGCCAAGCAGAAGCAAAAGC
AGGCGGAACATGTTCCCCCGTATGATGTGGTGCCCTCCATGCGGCCTGTGGTGCTGGTGGGACCCTCTCT
GAAAGGCTATGAGGTCACGGACATGATGCAGAAGGCGCTCTTCGACTTCCTTAAACACAGGTTTGATGGC
AGGATCTCCATCACACGCGTCACGGCCGACCTCTCGCTGGCCAAGCGCTCTGTGCTCAACAATCCTGGCA
AGAGGACCATCATTGAGCGCTCCTCCGCCCGCTCCAGCATTGCTGAAGTGCAGAGTGAGATTGAGCGCAT
ATTCGAGCTGGCCAAATCCCTGCAGCTAGTGGTGTTGGATGCTGACACCATCAACCACCCAGCACAACTT
GCCAAGACCTCACTGGCTCCCATCATCGTCTTTGTCAAAGTGTCCTCGCCAAAGGTACTGCAGCGACTGA
TCCGCTCCAGGGGAAAGTCACAGATGAAGCACCTCACTGTACAGATGATGGCGTACGATAAGCTGGTTCA
GTGCCCACCCGAGTCATTCGACGTGATTCTGGATGAGAACCAGCTAGAAGATGCCTGTGAGCACCTGGCT
GAATACTTAGAGGTTTACTGGCGAGCGACCCACCACCCAGCACCGGGCCCCGGACTGCTGGGTCCGCCTA
GTGCCATCCCTGGACTTCAGAACCAGCAGCTGCTGGGGGAGCGAGTGGAGGAGCACTCACCCCTGGAGAG
GGACAGCCTGATGCCCTCAGATGAGGCCAGCGAGAGCTCCCGCCAGGCCTGGACCGGATCTTCACAGCGC
AGCTCTCGCCATCTGGAGGAGGACTATGCAGATGCCTACCAGGACCTGTACCAGCCTCACCGCCAACACA
CCTCGGGGCTGCCCAGTGCTAACGGGCACGACCCCCAAGACCGGCTCCTAGCCCAGGACTCGGAGCATGA
CCACAATGACCGGAACTGGCAGCGTAACCGGCCTTGGCCCAAGGACAGCTACTGA

Translation (484 aa):
MYDDSYVPGFEDSEAGSADSYTSRPSLDSDVSLEEDRESARREVESQAQQQLERAKHKPVAFAVRTNVSY
CGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQRLESIRLKQEQKARRSGN
PSSLGDIGNRRSPPPSLAKQKQKQAEHVPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFDG
RISITRVTADLSLAKRSVLNNPGKRTIIERSSARSSIAEVQSEIERIFELAKSLQLVVLDADTINHPAQL
AKTSLAPIIVFVKVSSPKVLQRLIRSRGKSQMKHLTVQMMAYDKLVQCPPESFDVILDENQLEDACEHLA
EYLEVYWRATHHPAPGPGLLGPPSAIPGLQNQQLLGERVEEHSPLERDSLMPSDEASESSRQAWTGSSQR
SSRHLEEDYADAYQDLYQPHRQHTSGLPSANGHDPQDRLLAQDSEHDHNDRNWQRNRPWPKDSY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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