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Report for CCDS27860.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27860.1 Public Mus musculus 15 Krt6a 23 108 98 CCDS HistoryNCBI Gene:16687Re-query CCDS DB by CCDS ID:27860.1Re-query CCDS DB by GeneID:16687See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27860.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023788.7 ENSMUSP00000023788.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023788.7Link to Ensembl Protein Viewer:ENSMUSP00000023788.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000023788Re-query CCDS DB by Protein ID:ENSMUSP00000023788
Original member NCBI NM_008476.3 NP_032502.3 Updated not alive Link to Nucleotide Sequence:NM_008476.3Link to Protein Sequence:NP_032502.3Re-query CCDS DB by Nucleotide ID:NM_008476Re-query CCDS DB by Protein ID:NP_032502
Current member NCBI NM_008476.4 NP_032502.3 Accepted alive Link to Nucleotide Sequence:NM_008476.4Link to Protein Sequence:NP_032502.3Re-query CCDS DB by Nucleotide ID:NM_008476Re-query CCDS DB by Protein ID:NP_032502Link to BLAST:NP_032502.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032502.3 553 P50446 553 100% 0 0

Chromosomal Locations for CCDS 27860.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 101690467 101690702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101690807 101690841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101691285 101691505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101691646 101691771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101692188 101692352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101692481 101692576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101692734 101692794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101692963 101693177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101693742 101694248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1662 nt):
ATGTCTACCAAAACCACCATCAAAAGTCAAACCAGCCACCGTGGCTACAGTGCCAGCTCAGCCAGAGTGC
CTGGGCTCAACCGCTCTGGCTTCAGCAGTGTGTCCGTGTGCCGCTCCCGGGGCAGCGGTGGCTCCAGTGC
AATGTGTGGAGGAGCTGGCTTTGGCAGCAGGAGCCTCTATGGTGTGGGGAGCTCCAAGAGGATCTCCATC
GGAGGGGGCAGCTGTGGCATTGGAGGAGGCTATGGCAGCCGATTTGGAGGAAGCTTCGGCATTGGAGGTG
GAGCTGGTAGTGGCTTTGGCTTCGGTGGTGGAGCTGGCTTTGGTGGTGGCTATGGGGGAGCTGGCTTCCC
GGTGTGCCCACCTGGAGGCATCCAAGAGGTCACCATCAACCAGAGCCTCCTCACACCCCTGAACCTGCAA
ATTGACCCCACCATCCAGCGGGTCAGGACTGAGGAGAGGGAGCAGATCAAGACCCTCAACAACAAGTTTG
CCTCCTTCATCGACAAGGTGCGGTTCCTGGAGCAGCAGAACAAGGTCCTGGACACCAAGTGGGCCCTGCT
GCAAGAGCAGGGCACCAAGACCGTGAGGCAGAACCTGGAGCCTATGTTTGAGCAGTACATCAGCAACCTC
CGCAGACAGCTGGACAGCATCATTGGAGAGAGGGGTCGCCTGGACTCAGAGCTGAGGAACATGCAGGACA
CAGTGGAGGACTACAAGAGCAAATATGAAGATGAAATCAACAAGCGCACAGCAGCAGAGAATGAATTCGT
GACCCTGAAGAAGGATGTAGATGCTGCCTACATGAACAAAGTTGAACTGCAAGCCAAGGCAGACAGTCTA
ACAGATGATATCAACTTCTTGAGAGCTCTCTATGAAGCAGAACTGTCTCAGATGCAAACTCACATCTCAG
ACACATCTGTGGTCCTCTCCATGGACAACAACCGTAGCCTGGACCTGGACAGCATCATCGCTGAGGTCAA
GGCCCAGTATGAGGACATTGCTCAGAGAAGTCGGGCTGAAGCTGAGTCCTGGTACCAGACTAAATATGAG
GAGCTGCAGGTCACAGCTGGCAGACATGGGGACGACCTACGCAACACCAAGCAGGAGATTGCTGAGATCA
ACCGCATGATCCAGAGGCTGAGATCTGAGATCGACCACGTTAAGAAGCAGTGTGCCAACCTGCAAGCTGC
TATTGCTGATGCTGAGCAACGTGGGGAGATGGCCCTGAAGGATGCCAGGGGCAAGCTGGAAGGGCTGGAG
GATGCCCTGCAGAAGGCCAAACAGGACATGGCCAGGCTGCTGAAGGAGTACCAGGAACTCATGAATGTCA
AGCTGGCCCTGGATGTGGAAATTGCCACCTACAGGAAGCTGCTGGAAGGAGAGGAGTGCAGGTTGAATGG
TGAAGGTGTTGGACCAGTCAACATCTCTGTGGTGCAGTCCACCGTGTCCAGCGGCTATGGCAGTGCCGGG
GGTGCCAGCAGCAGCTTAGGCCTGGGTGGAGGCAGCAGCTACTCCTATAGCAGCAGCCATGGCCTTGGAG
GTGGCTTCAGTGCTGGCAGTGGCAGAGCCATCGGAGGTGGCCTCAGCTCTTCTGGTGGCCTCAGCTCTTC
TACCATCAAATACACCACCACCTCCTCCAGCAAGAAGAGCTACAGGCAGTGA

Translation (553 aa):
MSTKTTIKSQTSHRGYSASSARVPGLNRSGFSSVSVCRSRGSGGSSAMCGGAGFGSRSLYGVGSSKRISI
GGGSCGIGGGYGSRFGGSFGIGGGAGSGFGFGGGAGFGGGYGGAGFPVCPPGGIQEVTINQSLLTPLNLQ
IDPTIQRVRTEEREQIKTLNNKFASFIDKVRFLEQQNKVLDTKWALLQEQGTKTVRQNLEPMFEQYISNL
RRQLDSIIGERGRLDSELRNMQDTVEDYKSKYEDEINKRTAAENEFVTLKKDVDAAYMNKVELQAKADSL
TDDINFLRALYEAELSQMQTHISDTSVVLSMDNNRSLDLDSIIAEVKAQYEDIAQRSRAEAESWYQTKYE
ELQVTAGRHGDDLRNTKQEIAEINRMIQRLRSEIDHVKKQCANLQAAIADAEQRGEMALKDARGKLEGLE
DALQKAKQDMARLLKEYQELMNVKLALDVEIATYRKLLEGEECRLNGEGVGPVNISVVQSTVSSGYGSAG
GASSSLGLGGGSSYSYSSSHGLGGGFSAGSGRAIGGGLSSSGGLSSSTIKYTTTSSSKKSYRQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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