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Report for CCDS27898.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27898.1 Public Mus musculus 15 Smug1 23 108 98 CCDS HistoryNCBI Gene:71726Re-query CCDS DB by CCDS ID:27898.1Re-query CCDS DB by GeneID:71726See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27898.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064067.8 ENSMUSP00000065835.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064067.8Link to Ensembl Protein Viewer:ENSMUSP00000065835.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000064067Re-query CCDS DB by Protein ID:ENSMUSP00000065835
Original member Current member EBI ENSMUST00000229371.1 ENSMUSP00000155594.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000229371.1Link to Ensembl Protein Viewer:ENSMUSP00000155594.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000229371Re-query CCDS DB by Protein ID:ENSMUSP00000155594
Original member Current member EBI ENSMUST00000229377.1 ENSMUSP00000155700.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000229377.1Link to Ensembl Protein Viewer:ENSMUSP00000155700.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000229377Re-query CCDS DB by Protein ID:ENSMUSP00000155700
Original member Current member NCBI NM_027885.3 NP_082161.2 Accepted alive Link to Nucleotide Sequence:NM_027885.3Link to Protein Sequence:NP_082161.2Re-query CCDS DB by Nucleotide ID:NM_027885Re-query CCDS DB by Protein ID:NP_082161Link to BLAST:NP_082161.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082161.2 279 Q6P5C5 279 100% 0 0

Chromosomal Locations for CCDS 27898.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 103155653 103156201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103157617 103157907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (840 nt):
ATGGCTGCGTCCCAGACCTTCCCACTGGGGCCTACCCATGAGCCTGCAAGCGCCCTGATGGAGCCTCTGC
CTTGTACACGAAGCTTGGCTGAGGGCTTCCTGGAGGAGGAGCTTCGGCTCAATGCCGAGCTGAGCCAGCT
GCAGTTCCCGGAGCCCGTGGGTGTCATCTACAACCCGGTGGATTATGCTTGGGAGCCACACCGTAACTAT
GTGACTCGCTACTGCCAAGGCCCCAAGGAAGTGCTGTTCTTGGGCATGAACCCAGGACCTTTTGGCATGG
CCCAAACAGGGGTACCCTTTGGGGAAGTGAATGTGGTCCGGGACTGGTTGGGCGTTGGGGGCCCTGTGCT
GACCCCTCCACAAGAGCACCCCAAGCGACCAGTGTTGGGACTGGAGTGCCCACAGTCAGAGGTGAGCGGA
GCCCGATTCTGGGGCTTTTTCCGGACCCTCTGCGGACAGCCTCAAGTCTTCTTCCGGCACTGCTTTGTCC
ACAATCTGTGTCCTCTACTCTTCTTGGCTCCCAGTGGACGAAACCTTACCCCAGCTGAGCTGCCCGCCAA
GCAGCGGGAGCAGCTGCTGTCGATCTGCGACGCAGCCCTCTGCCGGCAGGTGCAGCTGCTAGGGGTGCGT
CTGGTAGTGGGAGTGGGGCGGCTGGCAGAGCAGCGAGCCCGAAGAGCTCTAGCAGGGCTGACCCCGGAGG
TGCAGGTGGAGGGGCTCCTGCATCCATCTCCTCGAAGCGCACAGGCCAACAAAGGCTGGGAGGCGGCAGC
CAGGGAAAGACTCCAGGAGTTGGGGCTGCTGCCTCTGCTAACGGATGAGGGTTCAGCCAGACCTACATAG

Translation (279 aa):
MAASQTFPLGPTHEPASALMEPLPCTRSLAEGFLEEELRLNAELSQLQFPEPVGVIYNPVDYAWEPHRNY
VTRYCQGPKEVLFLGMNPGPFGMAQTGVPFGEVNVVRDWLGVGGPVLTPPQEHPKRPVLGLECPQSEVSG
ARFWGFFRTLCGQPQVFFRHCFVHNLCPLLFLAPSGRNLTPAELPAKQREQLLSICDAALCRQVQLLGVR
LVVGVGRLAEQRARRALAGLTPEVQVEGLLHPSPRSAQANKGWEAAARERLQELGLLPLLTDEGSARPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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