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Report for CCDS27961.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27961.2 Public Mus musculus 16 Gspt1 23 108 98 CCDS HistoryNCBI Gene:14852Re-query CCDS DB by CCDS ID:27961.2Re-query CCDS DB by GeneID:14852See the combined annotation on chromosome 16 in Sequence Viewer

Public Note for CCDS 27961.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 27961.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080030.13 ENSMUSP00000078940.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080030.13Link to Ensembl Protein Viewer:ENSMUSP00000078940.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000080030Re-query CCDS DB by Protein ID:ENSMUSP00000078940
Original member Current member NCBI NM_146066.2 NP_666178.2 Accepted alive Link to Nucleotide Sequence:NM_146066.2Link to Protein Sequence:NP_666178.2Re-query CCDS DB by Nucleotide ID:NM_146066Re-query CCDS DB by Protein ID:NP_666178Link to BLAST:NP_666178.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666178.2 636 Q8R050-1 636 100% 0 0

Chromosomal Locations for CCDS 27961.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 11220827 11220879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11222585 11222753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11223212 11223301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11224420 11224593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11228115 11228195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11229209 11229302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11230510 11230650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11230837 11230991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11232532 11232712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11235366 11235443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11237531 11237564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11238872 11239099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11240666 11240707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11240805 11240840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11253643 11253997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1911 nt):
ATGGATCCTAGCAGCGGCGGTGGCGGCGGTGGCGGCGGCGGCGGGAGCAGCAGCAGCAGCGACTCTGCGC
CCGACTGCTGGGACCAGACGGATATGGAGGCCCCCGGGCCCGGGCCTTGCGGCGGCGGCGGGAGCGGCAG
CGGCTCCATGGCCGCGGTGGCCGAGGCCCAGCGTGAGAACCTCAGCGCGGCTTTCAGCCGGCAACTCAAC
GTCAACGCCAAGCCTTTCGTCCCCAACGTCCACGCCGCTGAATTCGTGCCGTCCTTCCTGCGGGGTCCGG
CCCAGCCGCCGCTATCCCCAGCTGGCGCAGCCGGAGGCGACCACGGAGCAGGCAGCGGCGCGGGAGGCCC
TTCGGAACCTGTAGAGTCCTCTCAAGACCAGTCGTGTGAAGGTTCAAATTCTACTGTTAGCATGGAACTT
TCAGAACCTGTTGTAGAAAATGGAGAGACAGAAATGTCCCCAGAAGAATCATGGGAGCACAAAGAAGAAA
TAAGTGAAGCGGAGCCAGGGGGTGGTTCCTCAGGAGATGGAAGGCCACCAGAGGAAAGCACCCAAGAAAT
GATGGAGGAGGAGGAAGAAATACCGAAACCTAAGTCAGCGGTGGCACCACCAGGTGCTCCCAAGAAGGAA
CATGTAAATGTAGTGTTCATCGGACATGTTGATGCAGGCAAGTCAACCATTGGAGGACAAATAATGTATT
TGACTGGAATGGTCGACAAAAGGACACTTGAGAAGTATGAACGAGAAGCTAAAGAAAAAAACAGAGAAAC
TTGGTACTTGTCTTGGGCCTTAGACACGAATCAGGAAGAACGAGACAAGGGCAAAACCGTGGAGGTGGGT
CGTGCCTATTTTGAAACGGAAAAGAAGCATTTTACAATTCTAGATGCTCCTGGCCATAAGAGTTTTGTCC
CAAATATGATTGGTGGTGCCTCTCAAGCTGACTTGGCTGTACTGGTAATCTCAGCCAGGAAAGGAGAGTT
TGAAACTGGATTTGAAAAAGGAGGACAGACAAGAGAACATGCAATGTTGGCAAAGACAGCAGGTGTCAAA
CACTTAATTGTGCTTATTAATAAGATGGATGATCCAACGGTAAACTGGAGCAACGAGAGATATGAAGAAT
GTAAAGAGAAACTAGTACCATTTTTGAAAAAAGTTGGCTTCAATCCCAAAAAGGACATTCATTTTATGCC
GTGCTCAGGACTGACAGGAGCGAATCTTAAAGAACAATCAGATTTCTGTCCTTGGTACATTGGCTTACCA
TTTATTCCATATCTGGATAATTTGCCAAACTTCAATAGATCAGTTGATGGACCAATCAGGCTGCCAATTG
TCGATAAGTACAAGGATATGGGGACTGTGGTCCTGGGAAAGCTGGAATCTGGATCTATTTGTAAAGGCCA
GCAGCTTGTAATGATGCCAAATAAGCACAACGTGGAAGTTCTTGGAATACTTTCTGATGATGTAGAAACG
GACTCTGTAGCTCCAGGTGAAAACCTCAAAATCAGACTGAAAGGAATTGAAGAGGAAGAGATTCTTCCAG
GATTCATCCTTTGTGATCTTAATAATCTTTGTCATTCTGGACGCACATTTGATGCTCAGATAGTGATTAT
AGAGCACAAGTCCATCATCTGCCCAGGGTATAATGCGGTGCTGCATATTCATACCTGTATCGAAGAAGTC
GAAATAACAGCCTTAATCTGCTTGGTAGACAAGAAATCAGGAGAGAAAAGTAAGACTCGACCCCGTTTTG
TAAAACAAGATCAAGTATGCATTGCGCGTTTAAGGACAGCAGGAACCATCTGCCTGGAGACCTTTAAGGA
CTTCCCTCAGATGGGACGTTTTACCTTAAGAGATGAGGGTAAGACCATTGCAATTGGAAAAGTTCTGAAA
CTGGTTCCAGAGAAAGACTAA

Translation (636 aa):
MDPSSGGGGGGGGGGSSSSSDSAPDCWDQTDMEAPGPGPCGGGGSGSGSMAAVAEAQRENLSAAFSRQLN
VNAKPFVPNVHAAEFVPSFLRGPAQPPLSPAGAAGGDHGAGSGAGGPSEPVESSQDQSCEGSNSTVSMEL
SEPVVENGETEMSPEESWEHKEEISEAEPGGGSSGDGRPPEESTQEMMEEEEEIPKPKSAVAPPGAPKKE
HVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVG
RAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVK
HLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLP
FIPYLDNLPNFNRSVDGPIRLPIVDKYKDMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVET
DSVAPGENLKIRLKGIEEEEILPGFILCDLNNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCIEEV
EITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLK
LVPEKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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