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Report for CCDS27979.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27979.1 Public Mus musculus 16 Mzt2 23 108 98 CCDS HistoryNCBI Gene:72083Re-query CCDS DB by CCDS ID:27979.1Re-query CCDS DB by GeneID:72083See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27979.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023351.10 ENSMUSP00000023351.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023351.10Link to Ensembl Protein Viewer:ENSMUSP00000023351.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000023351Re-query CCDS DB by Protein ID:ENSMUSP00000023351
Original member Current member EBI ENSMUST00000117136.1 ENSMUSP00000113832.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117136.1Link to Ensembl Protein Viewer:ENSMUSP00000113832.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117136Re-query CCDS DB by Protein ID:ENSMUSP00000113832
Original member Current member NCBI NM_001359003.1 NP_001345932.1 Accepted alive Link to Nucleotide Sequence:NM_001359003.1Link to Protein Sequence:NP_001345932.1Re-query CCDS DB by Nucleotide ID:NM_001359003Re-query CCDS DB by Protein ID:NP_001345932Link to BLAST:NP_001345932.1
Original member Current member NCBI NM_029354.3 NP_083630.1 Accepted alive Link to Nucleotide Sequence:NM_029354.3Link to Protein Sequence:NP_083630.1Re-query CCDS DB by Nucleotide ID:NM_029354Re-query CCDS DB by Protein ID:NP_083630Link to BLAST:NP_083630.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345932.1 159 Q9CQ25 159 100% 0 0
NP_083630.1 159 Q9CQ25 159 100% 0 0

Chromosomal Locations for CCDS 27979.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 15848572 15848729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15862398 15862543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15862748 15862923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (480 nt):
ATGGCGGCGGCGGCGGCTGCTGCTGGTGGTGCTGCACTCGCGGTTTCCACAGGATTGGAGACAGCAACGC
TGCAGAAGCTGGCGCTTCGGCGGAAGAAAGTGCTGGGGGCCGAGGAGATGGAGCTGTACGAGCTAGCTCA
GGCTGCTGGCGCCGCCATCGACCCCGATGTGTTCAAGATCCTGGTGGACTTGCTGAATCTGAATGTGGCT
CCCCTCGCCGTCTTCCAGATGCTGAAGTCCATGTGTGCTGGGCAGCGGCTGGCAAGCGATCCCCAGGACT
CGGTGCCCATATCTCTGTCTACATCCACATCAGAGACCCGAGGAAGAAACCGAGGTGGCCCCATTCTTGG
CAATGTGACCATATCGGCAGAACGTGGAAGCCGTGAAAGACCCATCCAGAGAATGCCACGCCAGCCCAGT
GCGACTCGGCTGCCCAAGGTGGGAGGATCTGGAAAAAGCAACTCCCGAAGCAGCCCATAG

Translation (159 aa):
MAAAAAAAGGAALAVSTGLETATLQKLALRRKKVLGAEEMELYELAQAAGAAIDPDVFKILVDLLNLNVA
PLAVFQMLKSMCAGQRLASDPQDSVPISLSTSTSETRGRNRGGPILGNVTISAERGSRERPIQRMPRQPS
ATRLPKVGGSGKSNSRSSP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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