NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28189.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28189.1 Public Mus musculus 16 Cd200r1 23 108 98 CCDS HistoryNCBI Gene:57781Re-query CCDS DB by CCDS ID:28189.1Re-query CCDS DB by GeneID:57781See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28189.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057488.14 ENSMUSP00000053822.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057488.14Link to Ensembl Protein Viewer:ENSMUSP00000053822.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000057488Re-query CCDS DB by Protein ID:ENSMUSP00000053822
Original member NCBI NM_021325.3 NP_067300.1 Updated not alive Link to Nucleotide Sequence:NM_021325.3Link to Protein Sequence:NP_067300.1Re-query CCDS DB by Nucleotide ID:NM_021325Re-query CCDS DB by Protein ID:NP_067300
Current member NCBI NM_021325.4 NP_067300.1 Accepted alive Link to Nucleotide Sequence:NM_021325.4Link to Protein Sequence:NP_067300.1Re-query CCDS DB by Nucleotide ID:NM_021325Re-query CCDS DB by Protein ID:NP_067300Link to BLAST:NP_067300.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067300.1 326 Q9ES57 326 100% 0 0

Chromosomal Locations for CCDS 28189.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 44766009 44766072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44788746 44788808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44789547 44789861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44789973 44790224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44792727 44792826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44793350 44793395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44794200 44794340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGTTTTGCTTTTGGAGAACTTCTGCCCTAGCAGTGCTCTTAATATGGGGGGTCTTTGTGGCTGGGTCAA
GTTGTACTGATAAGAATCAAACAACACAGAACAACAGTTCATCTCCTCTGACACAAGTGAACACTACAGT
GTCTGTACAGATAGGTACAAAGGCTCTGCTCTGCTGCTTTTCTATTCCACTGACAAAAGCAGTATTAATC
ACATGGATAATAAAGCTCAGAGGCCTGCCATCCTGCACAATAGCATACAAAGTAGATACAAAGACCAATG
AAACCAGCTGCTTGGGCAGGAACATCACCTGGGCCTCCACACCTGACCACAGTCCTGAACTTCAGATCAG
TGCAGTGACCCTCCAGCATGAGGGGACTTACACATGTGAGACAGTAACACCTGAAGGGAATTTTGAAAAA
AACTATGACCTCCAAGTGCTGGTGCCCCCTGAAGTAACCTACTTTCCAGAGAAAAACAGATCTGCAGTCT
GTGAGGCAATGGCAGGCAAGCCTGCTGCACAGATCTCTTGGTCTCCAGATGGGGACTGTGTCACTACGAG
TGAATCACACAGCAATGGCACTGTGACTGTCAGGAGCACATGCCACTGGGAGCAGAACAATGTGTCTGAT
GTGTCCTGCATTGTCTCTCATTTGACTGGTAACCAATCTCTGTCCATAGAACTGAGTAGAGGTGGTAACC
AATCATTACGACCATATATTCCATACATCATACCATCAATTATCATTTTGATCATCATAGGATGCATTTG
TCTTTTGAAAATCAGTGGCTTCAGAAAATGCAAATTGCCAAAATTAGAAGCTACTTCAGCTATTGAGGAG
GATGAAATGCAGCCTTATGCTAGCTATACAGAGAAGAGCAATCCACTCTATGATACTGTGACTAAGGTGG
AGGCATTTCCAGTATCACAAGGCGAAGTCAATGGCACAGACTGCCTTACTTTGTCGGCCATTGGAATCTA
G

Translation (326 aa):
MFCFWRTSALAVLLIWGVFVAGSSCTDKNQTTQNNSSSPLTQVNTTVSVQIGTKALLCCFSIPLTKAVLI
TWIIKLRGLPSCTIAYKVDTKTNETSCLGRNITWASTPDHSPELQISAVTLQHEGTYTCETVTPEGNFEK
NYDLQVLVPPEVTYFPEKNRSAVCEAMAGKPAAQISWSPDGDCVTTSESHSNGTVTVRSTCHWEQNNVSD
VSCIVSHLTGNQSLSIELSRGGNQSLRPYIPYIIPSIIILIIIGCICLLKISGFRKCKLPKLEATSAIEE
DEMQPYASYTEKSNPLYDTVTKVEAFPVSQGEVNGTDCLTLSAIGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH