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Report for CCDS28193.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28193.1 Public Mus musculus 16 Slc35a5 23 108 98 CCDS HistoryNCBI Gene:74102Re-query CCDS DB by CCDS ID:28193.1Re-query CCDS DB by GeneID:74102See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28193.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023344.9 ENSMUSP00000023344.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023344.9Link to Ensembl Protein Viewer:ENSMUSP00000023344.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000023344Re-query CCDS DB by Protein ID:ENSMUSP00000023344
Original member Current member NCBI NM_028756.4 NP_083032.2 Accepted alive Link to Nucleotide Sequence:NM_028756.4Link to Protein Sequence:NP_083032.2Re-query CCDS DB by Nucleotide ID:NM_028756Re-query CCDS DB by Protein ID:NP_083032Link to BLAST:NP_083032.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083032.2 437 Q921R7 437 100% 0 0

Chromosomal Locations for CCDS 28193.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 45142147 45142212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45143621 45144401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45147268 45147335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45151453 45151586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45152577 45152675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45157461 45157626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1314 nt):
ATGAAAGTGATCTTCTTAAGGCAATTAAAAACCCGTGGAATGGAAAGAAAATGCTCCAGGCGCCCTGGGT
TAGGCCCACCAACGCTGTACACATTCCTGCTAGGCATTATATTCATTACTCTAAGTTCAAGTCGAATCTT
ACTGGTAAAATACTCTGCCAATGAAGAGAACAAGTATGACTATCTCCCTACCACTGTGAACGTGTGCTCA
GAGCTGATGAAGCTGATTCTCTGTATACTTGTGTCACTCTGTGTTATAAAGAAAGAAGATCATCAAAGTA
GACATTTGAGATGTACTTCCTGGAAGGAATTCTCAAGTTTCATGAAGTGGTCCATTCCTGCCTTTCTGTA
CTTCCTGGACAACTTGATTGTCTTCTATGTGCTGTCCTATCTTCAGCCTGCCATGGCTGTTATCTTCTCG
AATTTTAGCATTATAACAACAGCTCTTCTATTCAGGATAGTGCTGAAGCGGCATCTGAACTGGATCCAGT
GGGCATCCCTCCTGATTCTGTTCTTGTCTATCGTGGCCCTAACAGCCAGTACCAAAACGTCCCAGCATGA
ATTGGCAGGACATGGATTTCATCATGATGCCTTCTTCACCCCATCTAATTCCTGCCTTCATTTCAGGAGA
GACTGTTCCCTAAGAGACAATTGTACATCGAAGGAGTGGACTTTCAGTGAAGTCCAGTGGAACACCACAG
CCAGAGTTTTTAGTCACATCCGTTTGGGCTTGGGCCACGTTCTGATTATAGTTCAATGTTTTATTTCTTC
AATGGCCAATATCTATAATGAGAAGATCCTGAAGGAGGGGACACAGCTCACTGAGAGCATCTTCATACAG
AATAGCAAGCTTTATTTCTTTGGCATTGTTTTTAATGGGCTGACCCTGGTCCTTCAGAGCAGTAACCGTG
ACCAGATTCAGAACTGTGGGTTTTTTTATGGCCACAATGCATTTTCAGTAGTCCTTATTTTCGTGACTGC
CTTCCAGGGCCTTTCAGTGGCTTTTATCTTGAAATTCTTAGATAACATGTTTCATGTCTTGATGGCCCAG
GTGACAACTGTCATCATCACAACAGTGTCCGTCCTGGTCTTTGACTTCAGGCCCTCCCTGGATTTTTTCC
TAGAAGCCCCATCAGTTCTCCTCTCCATATTTATTTATAATGCTAGCAAGCCTCAAAATCTAGAGTGTGC
ACCTAAGCAAGAAAGAATCCGCCATCTGAGTGGCAGTCTTTGGGAGCGTTCCAGTGGGGATGGAGAAGAG
CTGGAAAGACTTACCAAACTCAAGAGTGATGACTCAGATGACGACACTTTATAA

Translation (437 aa):
MKVIFLRQLKTRGMERKCSRRPGLGPPTLYTFLLGIIFITLSSSRILLVKYSANEENKYDYLPTTVNVCS
ELMKLILCILVSLCVIKKEDHQSRHLRCTSWKEFSSFMKWSIPAFLYFLDNLIVFYVLSYLQPAMAVIFS
NFSIITTALLFRIVLKRHLNWIQWASLLILFLSIVALTASTKTSQHELAGHGFHHDAFFTPSNSCLHFRR
DCSLRDNCTSKEWTFSEVQWNTTARVFSHIRLGLGHVLIIVQCFISSMANIYNEKILKEGTQLTESIFIQ
NSKLYFFGIVFNGLTLVLQSSNRDQIQNCGFFYGHNAFSVVLIFVTAFQGLSVAFILKFLDNMFHVLMAQ
VTTVIITTVSVLVFDFRPSLDFFLEAPSVLLSIFIYNASKPQNLECAPKQERIRHLSGSLWERSSGDGEE
LERLTKLKSDDSDDDTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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