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Report for CCDS28217.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28217.1 Public Mus musculus 16 Cep97 23 108 98 CCDS HistoryNCBI Gene:74201Re-query CCDS DB by CCDS ID:28217.1Re-query CCDS DB by GeneID:74201See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28217.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023270.13 ENSMUSP00000023270.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023270.13Link to Ensembl Protein Viewer:ENSMUSP00000023270.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000023270Re-query CCDS DB by Protein ID:ENSMUSP00000023270
Original member Current member NCBI NM_028815.4 NP_083091.1 Accepted alive Link to Nucleotide Sequence:NM_028815.4Link to Protein Sequence:NP_083091.1Re-query CCDS DB by Nucleotide ID:NM_028815Re-query CCDS DB by Protein ID:NP_083091Link to BLAST:NP_083091.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083091.1 856 Q9CZ62-1 856 100% 0 0

Chromosomal Locations for CCDS 28217.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 55905168 55905869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55911555 55911630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55914857 55915631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55918538 55918662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55919403 55919567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55922071 55922237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55922927 55923040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55924969 55925070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55927721 55927879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55930466 55930608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55934753 55934795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2571 nt):
ATGGCGGTGGCGCGAGTCGACGGGGCTCTGGCTCCGGGAGAAGGATCAGTGGTGAACTGGTCAGGCCAGG
GACTGCAGAAATTAGGTGCCAACTTGCCCTGTGAAGCTGATGTCCATACCTTGATTCTGGATAAAAATCA
GATTATTAAACTGGAGAACCTAGAGAAATGCAAACAGTTAATCCAGTTGTCAGTGGCTAACAATCGCTTG
GTACGGATGATGGGTGTGGCCAAACTGACTCAACTCCGAGTGTTAAATTTACCTCATAATAGTATTGGCT
GCGTGGAAGGCCTGAAGGACCTAGTCCATTTGGAGTGGCTGAATTTAGCGGGCAATAATCTGAAGACCAT
GGAGCAAGTCAATAGCTGTACGGCTCTTCAGCACCTTGACTTATCAGACAATAACATTCCCCAGATAGGT
GATGTGTCGAAATTGATATCTTTGAAGACCTTGCTTTTACATGGAAACATCATCACTTCTCTTAGAATGG
CACCTGCTTATCTACCCAGAAATCTTTCTATATTGTCTTTGGCAGAAAACGAAATCCGAGACTTAAATGA
GATCTCGTTTTTGGCCTCTTTAAGTGAACTGGAGCAGTTGTCAATCATGAACAATCCTTGTGTGATGGCA
ACCCCGTCCATTCCAGGGTTTGACTATCGGCCGTTCATCGTCAGCTGGTGTCTAAATCTCAGAGTACTTG
ATGGATACGTGATTTCTCAGAAGGAAAGTCTGAAGGCTGAGTGGCTCTATAGTCAAGGCAAAGGGAGATC
GTATCGGCCTGGGCAGCACATCCAGCTTGTCCAGTACCTGGCTACAGTCTGTCCTCTTACTTCTGCACTG
GGTCTTCAAACTGCAGAGGATGCCAAACTCGAGAAGATTCTGAGCAAGCAGAGGTTTCACCAGAGGCAGC
TGATGAGCCAGAGCCAAGATGAAGAGTTGTCTCCTCTTGCTGCTGTTGAGACAAGGGTGCACCGTACGCC
TGAGTGCTCAAGCCCCGGGCAAGACTTCCAGGAAAGTGAACCTGTCCTCCAAATCAATTCTTGGGTTGGC
ATCAGCAGTAATGATGATCAGTTATATGCTGTTAAGAATAACTTCCCAGCTGCTGCACACGCTGCAAGAT
ATTCTCGGAATGACCTTCACCTGGAAGACATACAGACAGATGAGGACAAACTAAACTGTAGTCTGCTCTC
TTCAGAGTCCACTTTTATGCCAGTTGCTTCAGGACTGTCTCCAGTGTCTCCCACTGTTGAGCTGAGGCTA
CAGGGCATTAACTTGGGCCTAGAGGATGACGATGGTGCAGATGAGTTCACAAAAGGGCTGGAAAACCAGG
ACGAGGATAAGGACAAGGAAAAGTCTTTATGGGATATGAGTGAGAGTTGTGTTGAAATGCTGAAACGTAA
GATCAGTACAGAAGTAAGTGAGGCAGCTGGGCTGCTGCCTTGTCCCAAGTCAGTGATCATCAGTGCTGCC
TTGAAGGAGGATACCCACAGTCTTACATCTCTCCCTGAGTCAGCTGGACACAGTGCGTCTCGTACGGAAG
CAAACAGCGAGGAAGCCATGTCTCCTGCCACTTCAGAGAAATTTCCCTGTAGAATTTTGACCCAGAGGCC
TGCTGCTTTGGGACAAGATAAAGTCACCCTTCAGAAACTGAATGCAGCTGCCACTAAGCTTCAGGCCTGT
TGGAGAGGCTTTTACACCAGGAACTACAATCAGCAAGCCAAAGGGGTGCGCTATGAAATCCGGCTACGCA
GAATGCAGGAGCACATTGTCTGCCTAACAGATGAAGTGCGGAGGTTGAGAAAAGAAAGAGATGAAGAACG
TGTGAAGACTTTTGTGCAAGAAGAGGCTGTCAGGTTCCTTTGGAACGAGGTAAGATCTGTACAAGCTTGG
CAGCAGACAGTGGAACAGCGTCTGGCTTCCTGGCCGCCCGACGTGCCTCCTATATCAAGTACTCTGGCGT
CACCCAAGCCCCCGTTATTTCCACATCATCAGGACCCCTCTTCGGATCAGAGTTCGGACTGGCTCGTTGC
TGAGGACGAAGCTGCGCAAGGGAGATCAGCGCCAGACTTTCCCGACTCTGGGTTTCACTCCTCCCTGACA
GAGCAAGTTCCCTGTCTGCAGGATTCGTTGGATTTTGAAAAGAGTTCGGTAGAAAGCAGCGAAAACTCCG
TGTTGGGGAATTCCGCTGACACGGTGAAATGCGTCAAAGACCGAGACTCGGAGGCCACAGCCGAGGAGCA
CAGTGACTGCAGTAGGGAGAGCTCAGCCAGTGAGCAGGACAACACTCTGCTCCAACAGTATTTAACCTCC
GTCCAGCAGCTGGACGATGCCGCAGAGGCGGCCGATTCTGACGATGTGGCAGGAGACGGTAAGCGTCACC
TCGCTTGTTCTCCGGAAAGGTTTGACGCCTCCTCTGACAGTGAGACTCATAGAGTGGCCTCTACTTCACA
GGATGAAATTAGCCAGACGCCAGAGAATTGTCAGTTAAACGAAGAAGCCCAAGGGCAGCCTCCGGAGTGT
GACCCTGCCTTTCAGGGGTTGCATGTGGGTGTCACTGTGCAGCCTGTCTGA

Translation (856 aa):
MAVARVDGALAPGEGSVVNWSGQGLQKLGANLPCEADVHTLILDKNQIIKLENLEKCKQLIQLSVANNRL
VRMMGVAKLTQLRVLNLPHNSIGCVEGLKDLVHLEWLNLAGNNLKTMEQVNSCTALQHLDLSDNNIPQIG
DVSKLISLKTLLLHGNIITSLRMAPAYLPRNLSILSLAENEIRDLNEISFLASLSELEQLSIMNNPCVMA
TPSIPGFDYRPFIVSWCLNLRVLDGYVISQKESLKAEWLYSQGKGRSYRPGQHIQLVQYLATVCPLTSAL
GLQTAEDAKLEKILSKQRFHQRQLMSQSQDEELSPLAAVETRVHRTPECSSPGQDFQESEPVLQINSWVG
ISSNDDQLYAVKNNFPAAAHAARYSRNDLHLEDIQTDEDKLNCSLLSSESTFMPVASGLSPVSPTVELRL
QGINLGLEDDDGADEFTKGLENQDEDKDKEKSLWDMSESCVEMLKRKISTEVSEAAGLLPCPKSVIISAA
LKEDTHSLTSLPESAGHSASRTEANSEEAMSPATSEKFPCRILTQRPAALGQDKVTLQKLNAAATKLQAC
WRGFYTRNYNQQAKGVRYEIRLRRMQEHIVCLTDEVRRLRKERDEERVKTFVQEEAVRFLWNEVRSVQAW
QQTVEQRLASWPPDVPPISSTLASPKPPLFPHHQDPSSDQSSDWLVAEDEAAQGRSAPDFPDSGFHSSLT
EQVPCLQDSLDFEKSSVESSENSVLGNSADTVKCVKDRDSEATAEEHSDCSRESSASEQDNTLLQQYLTS
VQQLDDAAEAADSDDVAGDGKRHLACSPERFDASSDSETHRVASTSQDEISQTPENCQLNEEAQGQPPEC
DPAFQGLHVGVTVQPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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