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Report for CCDS28289.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28289.1 Public Mus musculus 16 N6amt1 23 108 98 CCDS HistoryNCBI Gene:67768Re-query CCDS DB by CCDS ID:28289.1Re-query CCDS DB by GeneID:67768See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28289.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054442.10 ENSMUSP00000061835.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054442.10Link to Ensembl Protein Viewer:ENSMUSP00000061835.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000054442Re-query CCDS DB by Protein ID:ENSMUSP00000061835
Original member Current member NCBI NM_026366.2 NP_080642.1 Accepted alive Link to Nucleotide Sequence:NM_026366.2Link to Protein Sequence:NP_080642.1Re-query CCDS DB by Nucleotide ID:NM_026366Re-query CCDS DB by Protein ID:NP_080642Link to BLAST:NP_080642.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080642.1 214 Q6SKR2-1 214 100% 0 0

Chromosomal Locations for CCDS 28289.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 87354253 87354386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87356178 87356264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87356898 87356988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87362520 87362603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87366139 87366280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87367465 87367571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (645 nt):
ATGGCGGCGCCGAGTGTCCCCACGCCGTTGTACGGGCACGTGGGTCGCGGAGCCTTCCGCGACGTGTACG
AGCCAGCGGAGGACACGTTCCTGTTACTGGACGCGCTCGAGGCGGCGGCGGCCGAGCTAGCAGGAGTGGA
AATATGCCTTGAAGTAGGAGCAGGATCTGGTGTGGTGTCTGCATTCCTGGCCTCCATGATAGGTCCTCGG
GCCTTATACATGTGCACTGATATCAACCCTGAGGCAGCCGCATGTACCTTGGAAACAGCACGCTGTAACA
GAGTCCATGTTCAGCCAGTGATCACAGATTTGGTGCACGGCTTGCTGCCCAGACTGAAGGGGAAAGTAGA
CCTGCTGGTGTTTAACCCCCCCTATGTAGTGACTCCGCCTGAAGAGGTAGGAAGTCGTGGAATAGAAGCA
GCCTGGGCTGGCGGCAGAAACGGCCGGGAAGTCATGGACAGGTTCTTCCCACTGGCTCCAGAACTCCTCT
CCCCAAGAGGGCTGTTCTACTTAGTTACCGTAAAAGAAAACAATCCCGAGGAAATCTTTAAAACAATGAA
GACAAGAGGTCTGCAAGGGACCACAGCACTTTGCAGGCAAGCAGGCCAAGAAGCCCTGTCAGTCCTCAGG
TTCAGCAAGTCCTAG

Translation (214 aa):
MAAPSVPTPLYGHVGRGAFRDVYEPAEDTFLLLDALEAAAAELAGVEICLEVGAGSGVVSAFLASMIGPR
ALYMCTDINPEAAACTLETARCNRVHVQPVITDLVHGLLPRLKGKVDLLVFNPPYVVTPPEEVGSRGIEA
AWAGGRNGREVMDRFFPLAPELLSPRGLFYLVTVKENNPEEIFKTMKTRGLQGTTALCRQAGQEALSVLR
FSKS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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