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Report for CCDS2833.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2833.1 Public Homo sapiens 3 TEX264 24 110 108 CCDS HistoryNCBI Gene:51368Re-query CCDS DB by CCDS ID:2833.1Re-query CCDS DB by GeneID:51368See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 2833.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341333.10 ENSP00000340969.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000341333.10Link to Ensembl Protein Viewer:ENSP00000340969.5Re-query CCDS DB by Nucleotide ID:ENST00000341333Re-query CCDS DB by Protein ID:ENSP00000340969
Original member Current member EBI ENST00000395057.5 ENSP00000378497.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395057.5Link to Ensembl Protein Viewer:ENSP00000378497.1Re-query CCDS DB by Nucleotide ID:ENST00000395057Re-query CCDS DB by Protein ID:ENSP00000378497
Original member Current member EBI ENST00000415259.5 ENSP00000396628.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000415259.5Link to Ensembl Protein Viewer:ENSP00000396628.1Re-query CCDS DB by Nucleotide ID:ENST00000415259Re-query CCDS DB by Protein ID:ENSP00000396628
Original member Current member EBI ENST00000416589.5 ENSP00000398802.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000416589.5Link to Ensembl Protein Viewer:ENSP00000398802.1Re-query CCDS DB by Nucleotide ID:ENST00000416589Re-query CCDS DB by Protein ID:ENSP00000398802
Original member Current member EBI ENST00000457573.5 ENSP00000408186.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000457573.5Link to Ensembl Protein Viewer:ENSP00000408186.1Re-query CCDS DB by Nucleotide ID:ENST00000457573Re-query CCDS DB by Protein ID:ENSP00000408186
Original member Current member EBI ENST00000611400.4 ENSP00000477946.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000611400.4Link to Ensembl Protein Viewer:ENSP00000477946.1Re-query CCDS DB by Nucleotide ID:ENST00000611400Re-query CCDS DB by Protein ID:ENSP00000477946
Original member Current member NCBI NM_001129884.3 NP_001123356.1 Accepted alive Link to Nucleotide Sequence:NM_001129884.3Link to Protein Sequence:NP_001123356.1Re-query CCDS DB by Nucleotide ID:NM_001129884Re-query CCDS DB by Protein ID:NP_001123356Link to BLAST:NP_001123356.1
Original member Current member NCBI NM_001243725.2 NP_001230654.1 Accepted alive Link to Nucleotide Sequence:NM_001243725.2Link to Protein Sequence:NP_001230654.1Re-query CCDS DB by Nucleotide ID:NM_001243725Re-query CCDS DB by Protein ID:NP_001230654Link to BLAST:NP_001230654.1
Original member Current member NCBI NM_001243726.2 NP_001230655.1 Accepted alive Link to Nucleotide Sequence:NM_001243726.2Link to Protein Sequence:NP_001230655.1Re-query CCDS DB by Nucleotide ID:NM_001243726Re-query CCDS DB by Protein ID:NP_001230655Link to BLAST:NP_001230655.1
Original member Current member NCBI NM_001278195.2 NP_001265124.1 Accepted alive Link to Nucleotide Sequence:NM_001278195.2Link to Protein Sequence:NP_001265124.1Re-query CCDS DB by Nucleotide ID:NM_001278195Re-query CCDS DB by Protein ID:NP_001265124Link to BLAST:NP_001265124.1
Original member Current member NCBI NM_015926.6 NP_057010.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015926.6Link to Protein Sequence:NP_057010.1Re-query CCDS DB by Nucleotide ID:NM_015926Re-query CCDS DB by Protein ID:NP_057010Link to BLAST:NP_057010.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123356.1 313 Q9Y6I9 313 100% 0 0
NP_001230654.1 313 Q9Y6I9 313 100% 0 0
NP_001230655.1 313 Q9Y6I9 313 100% 0 0
NP_001265124.1 313 Q9Y6I9 313 100% 0 0
NP_057010.1 313 Q9Y6I9 313 100% 0 0

Chromosomal Locations for CCDS 2833.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 51674305 51674562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51684413 51684634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51699406 51699574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51703724 51704016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGTCGGACCTGCTACTACTGGGCCTGATTGGGGGCCTGACTCTCTTACTGCTGCTGACGCTGCTGGCCT
TTGCCGGGTACTCAGGGCTACTGGCTGGGGTGGAAGTGAGTGCTGGGTCACCCCCCATCCGCAACGTCAC
TGTGGCCTACAAGTTCCACATGGGGCTCTATGGTGAGACTGGGCGGCTTTTCACTGAGAGCTGCAGCATC
TCTCCCAAGCTCCGCTCCATCGCTGTCTACTATGACAACCCCCACATGGTGCCCCCTGATAAGTGCCGAT
GTGCCGTGGGCAGCATCCTGAGTGAAGGTGAGGAATCGCCCTCCCCTGAGCTCATCGACCTCTACCAGAA
ATTTGGCTTCAAGGTGTTCTCCTTCCCGGCACCCAGCCATGTGGTGACAGCCACCTTCCCCTACACCACC
ATTCTGTCCATCTGGCTGGCTACCCGCCGTGTCCATCCTGCCTTGGACACCTACATCAAGGAGCGGAAGC
TGTGTGCCTATCCTCGGCTGGAGATCTACCAGGAAGACCAGATCCATTTCATGTGCCCACTGGCACGGCA
GGGAGACTTCTATGTGCCTGAGATGAAGGAGACAGAGTGGAAATGGCGGGGGCTTGTGGAGGCCATTGAC
ACCCAGGTGGATGGCACAGGAGCTGACACAATGAGTGACACGAGTTCTGTAAGCTTGGAAGTGAGCCCTG
GCAGCCGGGAGACTTCAGCTGCCACACTGTCACCTGGGGCGAGCAGCCGTGGCTGGGATGACGGTGACAC
CCGCAGCGAGCACAGCTACAGCGAGTCAGGTGCCAGCGGCTCCTCTTTTGAGGAGCTGGACTTGGAGGGC
GAGGGGCCCTTAGGGGAGTCACGGCTGGACCCTGGGACTGAGCCCCTGGGGACTACCAAGTGGCTCTGGG
AGCCCACTGCCCCTGAGAAGGGCAAGGAGTAA

Translation (313 aa):
MSDLLLLGLIGGLTLLLLLTLLAFAGYSGLLAGVEVSAGSPPIRNVTVAYKFHMGLYGETGRLFTESCSI
SPKLRSIAVYYDNPHMVPPDKCRCAVGSILSEGEESPSPELIDLYQKFGFKVFSFPAPSHVVTATFPYTT
ILSIWLATRRVHPALDTYIKERKLCAYPRLEIYQEDQIHFMCPLARQGDFYVPEMKETEWKWRGLVEAID
TQVDGTGADTMSDTSSVSLEVSPGSRETSAATLSPGASSRGWDDGDTRSEHSYSESGASGSSFEELDLEG
EGPLGESRLDPGTEPLGTTKWLWEPTAPEKGKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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