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Report for CCDS28339.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28339.1 Public Mus musculus 16 Runx1 23 108 98 CCDS HistoryNCBI Gene:12394Re-query CCDS DB by CCDS ID:28339.1Re-query CCDS DB by GeneID:12394See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28339.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113956.9 ENSMUSP00000109589.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113956.9Link to Ensembl Protein Viewer:ENSMUSP00000109589.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000113956Re-query CCDS DB by Protein ID:ENSMUSP00000109589
Original member Current member NCBI NM_009821.3 NP_033951.2 Accepted alive Link to Nucleotide Sequence:NM_009821.3Link to Protein Sequence:NP_033951.2Re-query CCDS DB by Nucleotide ID:NM_009821Re-query CCDS DB by Protein ID:NP_033951Link to BLAST:NP_033951.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033951.2 387 Q03347-2 387 99.7416% 0 1

Chromosomal Locations for CCDS 28339.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 92605655 92606124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 92613599 92613760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 92668708 92668812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 92688976 92689132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 92695484 92695753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1164 nt):
ATGCGTATCCCCGTAGATGCCAGCACGAGCCGCCGCTTCACGCCGCCTTCCACCGCGCTGAGCCCCGGCA
AGATGAGCGAGGCGCTGCCGCTGGGCGCCCCGGATGGCGGCGCCGCCCTGGCCAGCAAGCTGAGGAGCGG
CGACCGCAGCATGGTGGAGGTACTAGCTGACCACCCTGGCGAGCTAGTGCGCACCGACAGCCCCAACTTC
CTCTGCTCCGTGCTACCCACTCACTGGCGCTGCAACAAGACCCTGCCCATCGCTTTCAAGGTGGTGGCAC
TGGGGGACGTCCCGGATGGCACTCTGGTCACCGTCATGGCAGGCAACGATGAAAACTACTCGGCAGAACT
GAGAAATGCTACCGCGGCCATGAAGAACCAGGTAGCGAGATTCAACGACCTCAGGTTTGTCGGGCGGAGC
GGTAGAGGCAAGAGCTTCACTCTGACCATCACCGTCTTTACAAATCCGCCACAAGTTGCCACCTACCATA
GAGCCATCAAAATCACAGTGGACGGCCCCCGAGAACCCCGAAATGCCAGGCAGATCCAGCCATCCCCACC
GTGGTCCTATGACCAGTCCTACCAGTACCTGGGATCCATCACCTCTTCCTCTGTCCACCCAGCGACACCC
ATTTCACCCGGCCGTGCCAGCGGCATGACCAGCCTCTCTGCAGAACTTTCCAGTCGACTCTCAACGGCTC
CGGACCTGACCGCCTTCGGCGACCCACGCCAGTTCCCTACTCTGCCGTCCATCTCCGACCCGCGCATGCA
CTACCCAGGCGCCTTCACCTACTCGCCGCCCGTCACGTCGGGCATCGGCATCGGCATGTCAGCCATGAGC
TCGGCCTCTCGCTACCACACCTACCTGCCGCCGCCCTACCCCGGCTCATCACAGGCGCAGGCCGGGCCCT
TCCAGACCGGCTCGCCCTCCTACCATCTATACTACGGCGCCTCGGCCGGTTCCTACCAGTTCTCCATGGT
GGGCGGAGAGAGATCGCCCCCGCGCATCCTGCCGCCCTGCACCAACGCATCCACCGGCGCCGCGCTGCTC
AACCCCAGCCTCCCCAGCCAGAGCGACGTGGTGGAGACCGAGGGCAGCCATAGCAACTCGCCCACCAACA
TGCCCCCCGCGCGCCTGGAGGAGGCCGTGTGGCGGCCCTACTGA

Translation (387 aa):
MRIPVDASTSRRFTPPSTALSPGKMSEALPLGAPDGGAALASKLRSGDRSMVEVLADHPGELVRTDSPNF
LCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRS
GRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRNARQIQPSPPWSYDQSYQYLGSITSSSVHPATP
ISPGRASGMTSLSAELSSRLSTAPDLTAFGDPRQFPTLPSISDPRMHYPGAFTYSPPVTSGIGIGMSAMS
SASRYHTYLPPPYPGSSQAQAGPFQTGSPSYHLYYGASAGSYQFSMVGGERSPPRILPPCTNASTGAALL
NPSLPSQSDVVETEGSHSNSPTNMPPARLEEAVWRPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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