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Report for CCDS28458.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28458.1 Public Mus musculus 17 Cldn9 23 108 98 CCDS HistoryNCBI Gene:56863Re-query CCDS DB by CCDS ID:28458.1Re-query CCDS DB by GeneID:56863See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28458.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085989.7 ENSMUSP00000093236.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085989.7Link to Ensembl Protein Viewer:ENSMUSP00000093236.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000085989Re-query CCDS DB by Protein ID:ENSMUSP00000093236
Original member Current member NCBI NM_020293.3 NP_064689.2 Accepted alive Link to Nucleotide Sequence:NM_020293.3Link to Protein Sequence:NP_064689.2Re-query CCDS DB by Nucleotide ID:NM_020293Re-query CCDS DB by Protein ID:NP_064689Link to BLAST:NP_064689.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064689.2 217 Q9Z0S7 217 100% 0 0

Chromosomal Locations for CCDS 28458.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 23682996 23683649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (654 nt):
ATGGCTTCCACTGGCCTTGAACTCCTCGGCATGACCCTGGCTGTGCTAGGCTGGCTAGGAACTTTGGTGT
CCTGTGCCCTGCCACTGTGGAAGGTGACCGCCTTCATCGGCAACAGCATCGTTGTGGCCCAAGTGGTATG
GGAGGGGCTGTGGATGTCCTGTGTGGTCCAGAGCACTGGCCAGATGCAGTGCAAAGTATACGACTCACTG
CTGGCGCTGCCCCAGGACCTGCAGGCAGCCAGAGCCCTCTGTGTCGTGGCCCTCCTGCTGGCTTTGCTGG
GCCTGCTGGTGGCTATCACGGGCGCCCAGTGCACCACGTGTGTGGAGGACGAAGGTGCCAAGGCCCGTAT
CGTACTCACCGCAGGGGTCCTCCTCCTCCTCTCGGGCATTTTGGTGCTCATCCCTGTCTGCTGGACAGCC
CATGCCATCATCCAGGATTTTTATAACCCACTGGTTGCGGAAGCCCTCAAGAGAGAACTGGGGGCTTCCC
TCTACCTGGGCTGGGCTGCCGCTGCCCTGCTCATGCTAGGGGGAGGGCTCCTCTGCTGTACGTGTCCCCC
GTCACACTTTGAGCGTCCCCGCGGCCCCAGGCTGGGCTACTCCATCCCTTCCCGTTCAGGTGCTTCGGGA
CTGGATAAGAGGGACTATGTGTGA

Translation (217 aa):
MASTGLELLGMTLAVLGWLGTLVSCALPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTGQMQCKVYDSL
LALPQDLQAARALCVVALLLALLGLLVAITGAQCTTCVEDEGAKARIVLTAGVLLLLSGILVLIPVCWTA
HAIIQDFYNPLVAEALKRELGASLYLGWAAAALLMLGGGLLCCTCPPSHFERPRGPRLGYSIPSRSGASG
LDKRDYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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