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Report for CCDS28473.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28473.1 Public Mus musculus 17 Kctd5 23 108 98 CCDS HistoryNCBI Gene:69259Re-query CCDS DB by CCDS ID:28473.1Re-query CCDS DB by GeneID:69259See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28473.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017090.5 ENSMUSP00000017090.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017090.5Link to Ensembl Protein Viewer:ENSMUSP00000017090.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000017090Re-query CCDS DB by Protein ID:ENSMUSP00000017090
Original member Current member NCBI NM_027008.2 NP_081284.2 Accepted alive Link to Nucleotide Sequence:NM_027008.2Link to Protein Sequence:NP_081284.2Re-query CCDS DB by Nucleotide ID:NM_027008Re-query CCDS DB by Protein ID:NP_081284Link to BLAST:NP_081284.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081284.2 234 Q8VC57 234 99.5726% 0 1

Chromosomal Locations for CCDS 28473.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 24049415 24049444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24055925 24056050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24057741 24057836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24059222 24059313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24060243 24060351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24073177 24073428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (705 nt):
ATGGCGGAGAATCACTGCGAGCTGCTGCCGCCGGCTCCGAGCGGCCTCGGGGCGGGGCTGGGGGGCGGCC
TGTGCCGCCGCTGCAGCGCTGGGATGGGCGCCCTGGCTCAGCGCCCCGGTGGCGTGTCCAAGTGGGTCCG
GCTCAACGTCGGCGGCACCTACTTCCTCACCACCCGGCAGACGCTGTGCCGGGACCCGAAGTCTTTCCTG
TACCGCTTGTGCCAGGCGGACCCCGACCTAGATTCGGACAAGGATGAAACGGGTGCCTATTTAATCGACA
GAGATCCCACCTACTTTGGACCTGTACTGAACTACTTGAGACATGGAAAGCTGGTTATTAACAAAGACCT
CGCAGAGGAAGGAGTGTTGGAAGAAGCAGAATTTTACAATATCACCTCACTAATAAAACTTGTAAAGGAC
AAAATTAGAGAACGAGACAGCAAAATATCCCAGATGCCAGTGAAGCATGTGTACCGTGTGCTGCAGTGCC
AGGAGGAGGAGCTCACACAGATGGTATCCACAATGTCAGACGGCTGGAAGTTTGAGCAGCTGGTCAGCAT
TGGCTCCTCTTACAACTATGGAAATGAAGACCAGGCTGAGTTCCTCTGTGTGGTTTCCAAGGAGCTGCAC
AACACTCCATACGGCACAACCAGTGAGCCAAGCGAGAAAGCCAAGATTTTGCAAGAACGGGGCTCAAGGA
TGTGA

Translation (234 aa):
MAENHCELLPPAPSGLGAGLGGGLCRRCSAGMGALAQRPGGVSKWVRLNVGGTYFLTTRQTLCRDPKSFL
YRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKD
KIRERDSKISQMPVKHVYRVLQCQEEELTQMVSTMSDGWKFEQLVSIGSSYNYGNEDQAEFLCVVSKELH
NTPYGTTSEPSEKAKILQERGSRM


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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