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Report for CCDS28483.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28483.1 Public Mus musculus 17 Bricd5 23 108 98 CCDS HistoryNCBI Gene:319259Re-query CCDS DB by CCDS ID:28483.1Re-query CCDS DB by GeneID:319259See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28483.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054946.9 ENSMUSP00000059792.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054946.9Link to Ensembl Protein Viewer:ENSMUSP00000059792.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000054946Re-query CCDS DB by Protein ID:ENSMUSP00000059792
Original member Current member EBI ENSMUST00000164508.1 ENSMUSP00000130417.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164508.1Link to Ensembl Protein Viewer:ENSMUSP00000130417.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164508Re-query CCDS DB by Protein ID:ENSMUSP00000130417
Original member Current member NCBI NM_175682.3 NP_783613.1 Accepted alive Link to Nucleotide Sequence:NM_175682.3Link to Protein Sequence:NP_783613.1Re-query CCDS DB by Nucleotide ID:NM_175682Re-query CCDS DB by Protein ID:NP_783613Link to BLAST:NP_783613.1

Chromosomal Locations for CCDS 28483.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 24474221 24474238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24474405 24474560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24474639 24474740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24474990 24475143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24475240 24475334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (525 nt):
ATGTACAGCTCTCCCAAGCCGTTGCTGCAGATGCTCCGAAAGACCTTCCCGAGCTCCAGGGTACCCTGGC
CCAACCAAACTACTCTAGTGGATGTGGCCCAGAACATGGCAACCATCGTGGTGACTCCGTTTCAGAGCAA
CCACAGCTGGGCTGTGCTGTTTGACGGGCAGAACGGCTACATCTGTTACCGCCCTGCAGAGCACCAAGCC
TGCTTCCTCCGTCTGATGGAAGCCCAAGATTGGGAGACCCTGCAGCTGCTGCTGAACACTTCCAGGGCCC
AAGAGTCACATGTACCTGGCCGGGATACCCACTATGCCCAGGAGCTGCTGGCAGTTTTGGGGGGCCATAC
TGTGGACCCTACCCAAGTGGGAGTTTCAGTGCAACACCTTTGTGCAGACACTCCCATCTACTGGACCCAA
TGGGCAGAAGGGCCCCAGAGACAGCGGCTGATCTACCTCTGCATTGACATCTGCTTCCCGAGCAACATCT
GTGTGTCTGTCTGCTTTTATTACCTCCCAGACTAA

Translation (174 aa):
MYSSPKPLLQMLRKTFPSSRVPWPNQTTLVDVAQNMATIVVTPFQSNHSWAVLFDGQNGYICYRPAEHQA
CFLRLMEAQDWETLQLLLNTSRAQESHVPGRDTHYAQELLAVLGGHTVDPTQVGVSVQHLCADTPIYWTQ
WAEGPQRQRLIYLCIDICFPSNICVSVCFYYLPD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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