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Report for CCDS28488.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28488.1 Public Mus musculus 17 Nherf2 23 108 98 CCDS HistoryNCBI Gene:65962Re-query CCDS DB by CCDS ID:28488.1Re-query CCDS DB by GeneID:65962See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28488.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002572.5 ENSMUSP00000002572.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002572.5Link to Ensembl Protein Viewer:ENSMUSP00000002572.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000002572Re-query CCDS DB by Protein ID:ENSMUSP00000002572
Original member Current member NCBI NM_023055.2 NP_075542.2 Accepted alive Link to Nucleotide Sequence:NM_023055.2Link to Protein Sequence:NP_075542.2Re-query CCDS DB by Nucleotide ID:NM_023055Re-query CCDS DB by Protein ID:NP_075542Link to BLAST:NP_075542.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075542.2 337 Q9JHL1-1 337 99.4065% 0 2

Chromosomal Locations for CCDS 28488.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 24640231 24640389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24640595 24640657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24641709 24641752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24641819 24641972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24642191 24642370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24647527 24647727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24649938 24650150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGGCCGCGCTGGAATCGCTGCGGCCCCGCTTGTGTCGCCTGGTGCGCGGAGAGCAAGGGTACGGCTTTC
ACCTGCATGGCGAGAAAGGCCGCCGTGGCCAGTTCATCCGGCGCGTGGAGCCAGGCTCCCCAGCCGAGGC
GGCCGCGCTGCGCGCCGGGGACCGCCTGGTTGAGGTCAACGGCGTCAACGTAGAGGGCGAGACGCATCAC
CAGGTGGTACAGAGGATCAAGGCTGTGGAGGGGCAGACCCAGCTGCTTGTGGTGGACAAGGAGACCGATG
AGGAGCTCTGCCGGCGGCAACTGACCTGCACTGAGGAGATGGCCCATCGAGGGCTTCCCCCAGCCCACAA
CCCCTGGGAGCCAAAGCCGGACTGGGCATGCTCGGGCAGCCTTGGCTCGGACACTGGCCAGAAGGATGTC
AATGGGCCCCCAAGAGAGCTGCGTCCCCGGCTCTGCCACTTGCGAAGGGGACCCCAGGGCTACGGGTTCA
ACCTGCATAGTGACAAGTCCCGGCCTGGCCAGTACATCCGCTCTGTGGACCCTGGCTCTCCTGCTTCTCA
CTCTGGCCTCCGTGCCCAGGATCGGCTCATTGAGGTGAATGGGCAGAACGTGGAGGGGCTGCGACATGCC
GAGGTTGTCGCCAGAATCAAGGCACAGGAGGACGAGGCCCGGCTGCTGGTAGTCGATCCTGAGACTGATG
AACACTTCAAGCGGTTGAGGGTCATACCCACTGAGGAACATGTAGAAGGTCCACTGCCATCACCAGTCAC
GAACGGGACCAGTCCTGCCCAGCTCAATGGTGGCTCTGTGTGCTCATCCCGAAGTGACCTGCCAGGCTCA
GAGAAGGACAATGAGGATGGCAGTACCTGGAAGCGAGACCCCTTCCAGGAAAGTGGCCTCCACCTGAGTC
CCACAGCAGCTGAGGCCAAGGAGAAGGCTCGAGCTACTCGGGTCAACAAGCGGGCACCACAGATGGACTG
GAACCGGAAGCGAGAGATCTTCAGCAACTTCTGA

Translation (337 aa):
MAALESLRPRLCRLVRGEQGYGFHLHGEKGRRGQFIRRVEPGSPAEAAALRAGDRLVEVNGVNVEGETHH
QVVQRIKAVEGQTQLLVVDKETDEELCRRQLTCTEEMAHRGLPPAHNPWEPKPDWACSGSLGSDTGQKDV
NGPPRELRPRLCHLRRGPQGYGFNLHSDKSRPGQYIRSVDPGSPASHSGLRAQDRLIEVNGQNVEGLRHA
EVVARIKAQEDEARLLVVDPETDEHFKRLRVIPTEEHVEGPLPSPVTNGTSPAQLNGGSVCSSRSDLPGS
EKDNEDGSTWKRDPFQESGLHLSPTAAEAKEKARATRVNKRAPQMDWNRKREIFSNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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