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Report for CCDS28507.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28507.1 Public Mus musculus 17 Telo2 23 108 98 CCDS HistoryNCBI Gene:71718Re-query CCDS DB by CCDS ID:28507.1Re-query CCDS DB by GeneID:71718See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28507.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024987.5 ENSMUSP00000024987.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024987.5Link to Ensembl Protein Viewer:ENSMUSP00000024987.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000024987Re-query CCDS DB by Protein ID:ENSMUSP00000024987
Original member Current member EBI ENSMUST00000115181.8 ENSMUSP00000110835.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115181.8Link to Ensembl Protein Viewer:ENSMUSP00000110835.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115181Re-query CCDS DB by Protein ID:ENSMUSP00000110835
Original member Current member NCBI NM_001163661.1 NP_001157133.1 Accepted alive Link to Nucleotide Sequence:NM_001163661.1Link to Protein Sequence:NP_001157133.1Re-query CCDS DB by Nucleotide ID:NM_001163661Re-query CCDS DB by Protein ID:NP_001157133Link to BLAST:NP_001157133.1
Original member Current member NCBI NM_027880.2 NP_082156.2 Accepted alive Link to Nucleotide Sequence:NM_027880.2Link to Protein Sequence:NP_082156.2Re-query CCDS DB by Nucleotide ID:NM_027880Re-query CCDS DB by Protein ID:NP_082156Link to BLAST:NP_082156.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157133.1 840 Q9DC40-1 840 100% 0 0
NP_082156.2 840 Q9DC40-1 840 100% 0 0

Chromosomal Locations for CCDS 28507.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 25100008 25100120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25101299 25101414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25101640 25101704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25102011 25102110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25102637 25102728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25103580 25103771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25104607 25104678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25104808 25104924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25105084 25105175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25105346 25105434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25105730 25105843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25105989 25106068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25106772 25106908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25106989 25107130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25107327 25107395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25110227 25110329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25110707 25110854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25111116 25111184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25112980 25113257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25114937 25115271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2523 nt):
ATGGACCCAGCCCTGTCTGCTGTCCGGCTCACCGTCCAGGAAGCCATTCACATCCTTTCATCCTCAGAGG
ATGCTGGCCATATCCTTTCTACCCTGGGGACTCTGAAACGATACCTCGGTGGAACCGAGGATCCAGTTCT
TCCTGAGGAGAAGGAGGAGTTTGCCACTGTCCACTTCTCAGCCGTCCTTAGATGTCTGGTCAGCAAGCTG
AGCCCAGGTTGGCTGGAGCTGTCCCCCGGTGGCCAGCTGGAGCGGCTTTGGGAGAGCTTCTTCCTGGATG
GCCCTCCAGACCAAGCCTTCCTGGTGCTGATGGAAGCCATTGAGAGCACTGCTGGCCCTAGCTTCCGTCT
GATGAAGATGGCTCAGCTGCTGGACACATTTCTGAGCACGGGCAGAGTGGCTGCTCTAATGGAGGAGCAG
TGTCGGCCACAGACAAAGCCCAGCTTTCCCCTGTTCCAGGAGACGCTGCTCAGCAAGGTTGTGGGCTTAC
CTGATCTCCTGGGCAACTGTCTCCAGCGGGACAACCTGACCCAGTTCTTCCCCCAGAACTACTTCCCTCT
GCTTGGCCAGGAGGTTGTGCAGGCACTAAAGGCAGTTGTGAACTTTCTCCAAGATGGCCTAGACTGCTCT
GTCTCCTTCGTATCTCGAGTTCTTGGGAAGGTCTGCATCCAGGGCCGAAAGAGAGAGATCCTGAGTGTGC
TGGTGCCCCAGCTGACAGTGCTCACCCAGGACAGCTGTCTGTGGCAGCGGGTGTGCTGGCGCCTGGTGGA
GCAGGTGCCTGACCGGGCAGTGGAGGCTGTGCTGACAGGACTTGTAGAGGCTGCTCCCAGGCCTGAAGTC
CTGTCACGACTACTAGGGAACCTGGTGGTGAAGAATAAGAAAGCGCGGTTTGTGGTTACCCGCAAGCTCC
TGCTCCTGCAGTACCAGCACACGACACCCATGGTGCAGAGCCTGTTGGGGTACTTGGCTCTAGACAGTCA
GCGGCGGCCACTCCTCATACAGGTGCTTAAGGAGCTGCTGGAGACCTGGGGCTGCAGCAGTGCTGTCCGA
CACACACCCCTGGAGCAGCAGTGTTACATCAGCAAGGCCATCCTTGTCTGCCTGGCACACCTCGGGGAGC
CGGAGCTGCAGGACATCCGGGATGAATTGCTGGCCAGCATGATGGCAGGCGTGAAGTGCCGCCTGGATAG
CAGCCTGCCCCCTGTGCGCCGCTTGGGCATGATTGTGGCCGAGGTCATCAGCTCCAGGATCCACCCTGAG
GGGCCTCTCCTGAAATTCCAATATGAAGATGACGAGATGAGCCGTGAGTTGCTGGCTTTGGCTACCCCGG
AGCCTGCGGGTGACTGCTCCTCGGTGTCACGAGGCCCATCCCCAGCTCCTGTTGACACAGAGTCTCCTGT
AGAGATGCCAGAAAAGGCCGTGGAGAGTGATGTCCCCCCAACTCAGCCTCAGGGCTCTGACTCGGAGCTG
GACAGTGACGATGAGTTCATCCCCTATGACATGTCAGGGGACAGAGAGCTGAAGAGCAGCAAGGAGCCCC
TGTATATCCGAGACTGCGTGGAAGCTTTGACTACATCTGAGGACATGGAACGCTGGGAGGCGTCCCTAAA
GGGGCTTGAGGGCCTGGTATATAGGAGCCCCACGGCCACTCGGGAGGTGAGTGTGGAGCTGGCCAAAGTG
CTACTGCACCTGGAAGAGAAGACCTGTGTAGCAGAGTTTGAGCAGCTGCGCCAGAGCGCTCTGGTAGCTG
TTACAGTCACAGACCCGGAGCAGGTAGCCAAGTATCTGACCTCACAGTTCTATGGCCTAAACTATAGCCT
CCGCCAGCGCATGGACATCCTGGACGTCCTTGTTCTGGCTGCCCAGGCACTGTCTCGGCCAAAGAGCCTG
CAGAGACGTTCCCAGCACGGTCCCCCCGTTCCTGGCACCATGTGTTCACCAGCACTAGCCGTTTCTCAGA
CTGGCAATGTCGCTGCTCCTGACTGGCAGGTGGTTGTGGAGGAGCGGATCAGAAGCAAGACCCGGAGGTT
CTCGAAGGGCTGTCCTCAGCGGGAGCTGTCAGGCGTCCCCAATGAATTCAGCTCTGTGGCTGGCTACTTC
TTCTTCCCCCTCCTTCAGCACTTTGACAGGCCTCTGGTGACCTTCGACCTTTTAGGAGATGATCAGTTGG
TACTTGGAAGACTGACCCACACCTTAGCGTCCCTGATGTACCTGGCTGTTAACACCACAGTGGCTGTGCC
TATGGGTAAGGCCCTGCTGGAGTTTGTATGGGCCCTTCGCTTCCACGTTGACATTTACGTGCGCCGGGGC
TTGCTGTCTGCTGTGTCCTCTGTCCTCCTCAGTGTACCCACAGAGCGGCTGCTGGGGGACCTGCCAGATG
AGCTACTGGAAGCCAGATCCTGGTTGGCAGATGTGGCTGAGAAGGATGTGGACGAGGACTGTAGGGAGCT
GGCAGTAAGGGCTCTGCTGCTTCTGGAGAGACTCAAAGACAAGCTCCTGTCCAGTTCCTCTCCACAGCCC
TGA

Translation (840 aa):
MDPALSAVRLTVQEAIHILSSSEDAGHILSTLGTLKRYLGGTEDPVLPEEKEEFATVHFSAVLRCLVSKL
SPGWLELSPGGQLERLWESFFLDGPPDQAFLVLMEAIESTAGPSFRLMKMAQLLDTFLSTGRVAALMEEQ
CRPQTKPSFPLFQETLLSKVVGLPDLLGNCLQRDNLTQFFPQNYFPLLGQEVVQALKAVVNFLQDGLDCS
VSFVSRVLGKVCIQGRKREILSVLVPQLTVLTQDSCLWQRVCWRLVEQVPDRAVEAVLTGLVEAAPRPEV
LSRLLGNLVVKNKKARFVVTRKLLLLQYQHTTPMVQSLLGYLALDSQRRPLLIQVLKELLETWGCSSAVR
HTPLEQQCYISKAILVCLAHLGEPELQDIRDELLASMMAGVKCRLDSSLPPVRRLGMIVAEVISSRIHPE
GPLLKFQYEDDEMSRELLALATPEPAGDCSSVSRGPSPAPVDTESPVEMPEKAVESDVPPTQPQGSDSEL
DSDDEFIPYDMSGDRELKSSKEPLYIRDCVEALTTSEDMERWEASLKGLEGLVYRSPTATREVSVELAKV
LLHLEEKTCVAEFEQLRQSALVAVTVTDPEQVAKYLTSQFYGLNYSLRQRMDILDVLVLAAQALSRPKSL
QRRSQHGPPVPGTMCSPALAVSQTGNVAAPDWQVVVEERIRSKTRRFSKGCPQRELSGVPNEFSSVAGYF
FFPLLQHFDRPLVTFDLLGDDQLVLGRLTHTLASLMYLAVNTTVAVPMGKALLEFVWALRFHVDIYVRRG
LLSAVSSVLLSVPTERLLGDLPDELLEARSWLADVAEKDVDEDCRELAVRALLLLERLKDKLLSSSSPQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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