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Report for CCDS28590.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28590.1 Public Mus musculus 17 Srsf3 23 108 98 CCDS HistoryNCBI Gene:20383Re-query CCDS DB by CCDS ID:28590.1Re-query CCDS DB by GeneID:20383See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28590.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000130216.2 ENSMUSP00000117045.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000130216.2Link to Ensembl Protein Viewer:ENSMUSP00000117045.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000130216Re-query CCDS DB by Protein ID:ENSMUSP00000117045
Original member NCBI NM_013663.5 NP_038691.1 Updated not alive Link to Nucleotide Sequence:NM_013663.5Link to Protein Sequence:NP_038691.1Re-query CCDS DB by Nucleotide ID:NM_013663Re-query CCDS DB by Protein ID:NP_038691
Current member NCBI NM_013663.6 NP_038691.1 Accepted alive Link to Nucleotide Sequence:NM_013663.6Link to Protein Sequence:NP_038691.1Re-query CCDS DB by Nucleotide ID:NM_013663Re-query CCDS DB by Protein ID:NP_038691Link to BLAST:NP_038691.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038691.1 164 P84104 164 100% 0 0

Chromosomal Locations for CCDS 28590.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 29036243 29036448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29038490 29038624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29040775 29040813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29041207 29041293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29041384 29041411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (495 nt):
ATGCATCGTGATTCCTGTCCCTTGGATTGTAAGGTTTATGTAGGTAATCTTGGAAATAATGGAAACAAGA
CTGAATTAGAACGGGCTTTTGGCTATTATGGACCACTCAGAAGTGTGTGGGTTGCTCGAAACCCTCCTGG
CTTTGCTTTCGTCGAATTTGAGGATCCCCGAGATGCTGCTGATGCTGTCCGGGAACTAGATGGAAGAACA
CTGTGTGGCTGCCGTGTAAGAGTGGAACTGTCGAATGGTGAAAAGAGAAGTCGGAATCGTGGGCCGCCTC
CCTCTTGGGGTCGTCGTCCTCGAGATGATTACCGCAGGAGGAGTCCTCCACCTCGGCGCAGATCCCCAAG
AAGGAGAAGCTTTTCCCGAAGCCGGAGCAGGTCACTTTCTAGAGATAGGAGAAGAGAAAGGTCTCTGTCT
CGTGAGAGAAATCACAAGCCGTCTCGATCCTTCTCTAGGTCTCGTAGCCGATCTAGGTCAAATGAAAGGA
AATAG

Translation (164 aa):
MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT
LCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLS
RERNHKPSRSFSRSRSRSRSNERK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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