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Report for CCDS28800.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
28800.1 |
Public |
Mus musculus |
17 |
Rcan2 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:53901](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:28800.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:53901](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 17 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 28800.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000044895.12 |
ENSMUSP00000039473.5 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000044895.12](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000039473.5](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000044895](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000039473](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000229744.1 |
ENSMUSP00000155082.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000229744.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000155082.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000229744](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000155082](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001286653.1 |
NP_001273582.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001286653.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001273582.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001286653](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001273582](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001273582.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001357742.1 |
NP_001344671.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001357742.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001344671.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001357742](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001344671](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001344671.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_207649.1 |
NP_997532.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_207649.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_997532.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_207649](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_997532](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_997532.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 28800.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (732 nt): ATGAGGGGAGACGCCTACTTCATTGGAATGAGGAGCTTGGGGCAGCAGGCATCTATCCCTGAAGATGGGG GACTTTTCTTCCTCTGCTGCATAGACAGAGACTGGGCTGTCACTCAGTGTTTTGCTGAAGAGGCCTTCCA AGCACTCACTGACTTCAGTGATCTCCCCAACTCATTGTTTGCCTGCAATGTTCACCAGTCTGTGTTTGAA GAAGAGGAGAGCAAGGAAAAATTCGAGGGACTGTTCCGGACCTATGATGAATGTGTGACGTTCCAGCTGT TTAAGAGTTTCCGACGGGTTCGAATAAATTTCAGCCATCCCAAATCTGCAGCCCGTGCCCGGATAGAGCT TCATGAGACTCAGTTCAGAGGGAAGAAGCTAAAACTCTACTTCGCCCAGGTCCAGACCCCAGAGACAGAT GGAGACAAACTGCATTTGGCACCTCCACAGCCTGCCAAACAGTTCCTCATCTCACCCCCTTCATCTCCTC CTGTTGGCTGGAAGCCTATCAGCGATGCCACACCAGTCCTCAACTATGACCTTCTTTATGCTGTGGCCAA ACTAGGACCAGGAGAGAAATATGAGCTGCACGCTGGAACTGAGTCTACACCGAGCGTCGTGGTGCATGTG TGTGACAGCGACATGGAGGAGGAGGAGGACCCAAAGACTTCCCCAAAGCCAAAAATCATCCAGACCCGGC GTCCCGGCCTGCCACCCTCCGTGTCCAACTGA
Translation (243 aa): MRGDAYFIGMRSLGQQASIPEDGGLFFLCCIDRDWAVTQCFAEEAFQALTDFSDLPNSLFACNVHQSVFE EEESKEKFEGLFRTYDECVTFQLFKSFRRVRINFSHPKSAARARIELHETQFRGKKLKLYFAQVQTPETD GDKLHLAPPQPAKQFLISPPSSPPVGWKPISDATPVLNYDLLYAVAKLGPGEKYELHAGTESTPSVVVHV CDSDMEEEEDPKTSPKPKIIQTRRPGLPPSVSN
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