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Report for CCDS28851.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28851.1 Public Mus musculus 17 Med20 23 108 98 CCDS HistoryNCBI Gene:56771Re-query CCDS DB by CCDS ID:28851.1Re-query CCDS DB by GeneID:56771See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28851.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024778.2 ENSMUSP00000024778.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024778.2Link to Ensembl Protein Viewer:ENSMUSP00000024778.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000024778Re-query CCDS DB by Protein ID:ENSMUSP00000024778
Original member Current member NCBI NM_020048.4 NP_064432.1 Accepted alive Link to Nucleotide Sequence:NM_020048.4Link to Protein Sequence:NP_064432.1Re-query CCDS DB by Nucleotide ID:NM_020048Re-query CCDS DB by Protein ID:NP_064432Link to BLAST:NP_064432.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064432.1 212 Q9R0X0-1 212 100% 0 0

Chromosomal Locations for CCDS 28851.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 47611679 47611692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47612963 47613117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47618809 47619062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47622885 47623100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGGGAGTGACGTGTGTGTCCCAGATGCCTGTGGCTGAGGGCAAGAGTCTCCAGCAGACAGTGGAGCTCC
TCACCAAGAAACTGGAGATGCTTGGAGCAGAGAAACAAGGGACATTTTGTGTGGACTGTGAGACTTACCA
CACAGCTGCCTCTACCCTGGGCAGCCAAGGCCAGGCTGGGAAGCTGATGTACGTGATGCATAACTCTGAG
TACCCACTGAGCTGCTTTGCCCTCTTTGAGAATGGCCCTTGCCTCATTGCTGACACCAACTTCGATGTGC
TTATGGTGAAGCTCAAGGGCTTCTTCCAGAGTGCCAAGGCCAGCAAGATTGAGACCCGGGGCACTCGCTA
CCAGTATTGTGACTTCCTGGTGAAGGTGGGCACGGTCACAATGGGGCCCAGTGCCCGTGGCATCTCTGTG
GAGGTGGAGTATGGCCCTTGTGTGGTGGCTAGTGACTGCTGGAGCCTCCTGCTTGAGTTCCTACAGAGTT
TTCTAGGGAGCCACGCACCAGGGGCACCCACAGTATTTGGGAACAGACACGATGCGGTCTATGGGCCAGC
AGATACCATGATACAGTACATGGAACTCTTCAACAAGATCCGAAAACAGCAGCAAGTGCCAGTGGCTGGG
ATCCGTTAG

Translation (212 aa):
MGVTCVSQMPVAEGKSLQQTVELLTKKLEMLGAEKQGTFCVDCETYHTAASTLGSQGQAGKLMYVMHNSE
YPLSCFALFENGPCLIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTVTMGPSARGISV
EVEYGPCVVASDCWSLLLEFLQSFLGSHAPGAPTVFGNRHDAVYGPADTMIQYMELFNKIRKQQQVPVAG
IR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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