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Report for CCDS28945.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28945.1 Public Mus musculus 17 Ddx11 23 108 98 CCDS HistoryNCBI Gene:320209Re-query CCDS DB by CCDS ID:28945.1Re-query CCDS DB by GeneID:320209See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28945.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163605.2 ENSMUSP00000130440.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163605.2Link to Ensembl Protein Viewer:ENSMUSP00000130440.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000163605Re-query CCDS DB by Protein ID:ENSMUSP00000130440
Original member Current member NCBI NM_001003919.2 NP_001003919.1 Accepted alive Link to Nucleotide Sequence:NM_001003919.2Link to Protein Sequence:NP_001003919.1Re-query CCDS DB by Nucleotide ID:NM_001003919Re-query CCDS DB by Protein ID:NP_001003919Link to BLAST:NP_001003919.1

Chromosomal Locations for CCDS 28945.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 66126177 66126320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66129857 66130102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66130460 66130468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66130680 66130834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66133217 66133262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66134085 66134192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66135822 66135909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66136289 66136494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66138087 66138239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66139028 66139074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66139398 66139477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66140189 66140233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66140351 66140418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66143188 66143226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66143426 66143546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66143650 66143772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66144178 66144290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66147668 66147740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66147992 66148095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66148654 66148803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66149031 66149099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66149213 66149313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66149968 66150052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66150331 66150409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66150574 66150728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66150803 66150838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2643 nt):
ATGGCTGACGAAAACCAGGAGATTGGTGGCATCCATTTTCCTTTTCCCTTCCCGCCCTATCCTATCCAGA
AAGACTTCATGGCAGAGCTCTACAAGGTTTTGGAAGGTGGCAAGATTGGGATATTTGAAAGTCCAACTGG
CACGGGAAAGTCCTTAAGTCTGATTTGTGGGGCCCTTTCCTGGCTGCGTGACTTTGAAAAGAAGAAATTG
CAAGCAGAGGCTCTTCTCCTTGCACCTGGATCCGGCCCTCCAAGTAGTGAGAAGAACTCGCTCCTGACTT
CCTCATCTTGCCAAGAACCTACGGACACCCCGAGGCCTGCTGGAGAGCCTGACTGGGTCACCGAATTTGT
GCAGAAGAAAGAAGAAAGGGACCTGGTGGAGAGGCTAAGGGAGGAGCAGAAACATGAGGAAGAGGAGACT
GAGGCTCTCCTGCGCCTCAGCAGGGAGATGCTGGATGCAGGGACAGGACCAGAGCAGCTGGAGCAGCTGG
AGTGTGGGGAGGAGCACCTGGTTCTGGCAGAATATGAGAGTGATGAGGAGAGAAGAGGCAGCAGGGTGGA
CGAGGCTGAGGATGACTTGGAGGAAGAACATATAACCAAGATTTATTACTGCAGTCGGACACACTCACAG
CTGGCCCAGTTTGTGCGGGAAGTACTGAAGAGCCCTTTTGGCAAGGAGACCCGGCTAGTCTCACTTGGCT
CTAGGCAGACCCTTTGTGTGAATGAAGATGTGAAAAACCTGGGTTCTGTGCAACTTATGAATGACCGCTG
TGTGGACATGCAAAGAAGCAAACGCGAAAAGAACGGGACTGGGGAAGACAAGCCAAAGAGAAAGAGACAG
AAGATCCAGACCTCTTGCCCCTTCTACAACCACGAGCAGATGGAGCTTCTCCGGGATGAGATTCTGCTGG
AAGTGAAGGACATGGAACAACTTGTGGCCCTTGGGAAGGAGGCCCGGGCCTGCCCCTATTACGGAAGCCG
CTTTGCCATCCCTGCAGCCCAGCTAGTGGTGCTACCCTACCCAATGTTGCTGCATGCAGCTACCCGACAG
GCTGCGGGAATCCGGCTACAAGGTCAGGTGGTCATTATTGACGAGGCTCACAACCTGATCGACACCATCA
CCAACATCCACAGCACAGAGGTCAATGGTTCCCAGCTCTGCCAGGCCCATTCCCAGTTGCTCCAGTACAT
GGAAAGATACAGGAAGCGTTTAAAGGCCAAGAACTTGATGTACATCAAGCAGATCCTGTACTTGCTGGAG
AAGTTTGTGGCTGTTTTGGGAGGTAATGTTAAGCAAAATCCTACTACACAGAGCCTGTCTCAAACAGGGT
CTGAGCTGAAGAGCATCAACGACTTTCTCTTTCAGAGCCAGGTGGACAACATCAACCTCTTCAAGGTGCA
GCGGTACTTGGAGAAGAGCATGCTCAGCAGGAAGCTCTTTGGCTTCACAGAATGTTTCGGAGTGGTTCTT
CCATCCCTCTCAGACTCTCAGGAAAACCGAGGTCTGGCTGGCTTCCAGCAGTTCCTGAAGAGCCTGCAGT
CAGGGCCTACTGAGGACTCCCCGGAGGAGGGCCAGGCTGTAGCCCTGCGGCCTGCCTCTCCACTGATGCA
CATCGAGGCCTTCCTGGCAGCTCTCACCACAGCCAATCAGGATGGCAGGGTTATTGTGAACCGCCAAGGC
AGTGTGGGTCAGAGCAGCCTTAAATTCTTACTCTTGAACCCAGCTGTGCACTTTGCCCAGGTGGTGAAGG
AATGCCGAGCAGTGGTCATTGCAGGTGGCACCATGCAGCCGATGTCTGACTTTCGGGAGCAGCTGCTGGC
ATGTTCTGGAGTAGAAGCGGGGCGAGTGGTGGAGTTTTCCTGTGGTCACGTGATCCCTCCAGACAACATC
TTGCCCCTTATTATATGCAGTGGGCCCTCTAACCAGCAGCTGGAATTCACCTACCAGAGAAGAGAGCTGC
CTCAGATGGTGGAGGAGACAGGCCGCATTCTCTGTAACTTGTGCAATGTGGTCCCTGGAGGTGTGGTATG
CTTTCTCCCTTCTTATGAGTACCTGCGCCAGGTACATGCTCACTGGGACAAGACTGGCCTGCTGACACGT
TTGTCTGTCAGGAAAAAGATATTTCAAGAGCCCAAAAGAGCGAGCCAGGTGGAGCAGGTGCTGATGGCGT
ATTCCAAGTGCATTATGAGCTGCAGTCACTCAGAAGGCCATCTGACAGGGGCCTTGCTCCTCTCTGTGGT
TGGAGGGAAGATGAGTGAAGGGATCAATTTCTCTGATGACCTGGGCCGGTGTGTGGTGATGGTGGGGATG
CCATATCCCAACATTAAGTCTCCAGAGCTGCAAGAGAAGATGGCCTACTTGAATCAGACACTTCCTAGGA
CACAAGGTCAGCCCCTGCCAGGGACGGTATTGATAGAGAATCTGTGTATGAAGGCTATAAACCAATCCAT
AGGCAGGGCCATTAGGCACCAGAGGGACTTTGCCAGCATTGTGCTCCTGGATCACCGGTATGCGCGTCCT
TCTATTCTGGCGAAGCTGCCAGCCTGGATACGAGACCGAGTGGAGGTCAAAGCTACCTTTGGGCCTGCAT
TTGCTGCTGTGCGGAAGTTTCATCGAGAGAAGTCACACCCAAGTCTGGTATAA

Translation (880 aa):
MADENQEIGGIHFPFPFPPYPIQKDFMAELYKVLEGGKIGIFESPTGTGKSLSLICGALSWLRDFEKKKL
QAEALLLAPGSGPPSSEKNSLLTSSSCQEPTDTPRPAGEPDWVTEFVQKKEERDLVERLREEQKHEEEET
EALLRLSREMLDAGTGPEQLEQLECGEEHLVLAEYESDEERRGSRVDEAEDDLEEEHITKIYYCSRTHSQ
LAQFVREVLKSPFGKETRLVSLGSRQTLCVNEDVKNLGSVQLMNDRCVDMQRSKREKNGTGEDKPKRKRQ
KIQTSCPFYNHEQMELLRDEILLEVKDMEQLVALGKEARACPYYGSRFAIPAAQLVVLPYPMLLHAATRQ
AAGIRLQGQVVIIDEAHNLIDTITNIHSTEVNGSQLCQAHSQLLQYMERYRKRLKAKNLMYIKQILYLLE
KFVAVLGGNVKQNPTTQSLSQTGSELKSINDFLFQSQVDNINLFKVQRYLEKSMLSRKLFGFTECFGVVL
PSLSDSQENRGLAGFQQFLKSLQSGPTEDSPEEGQAVALRPASPLMHIEAFLAALTTANQDGRVIVNRQG
SVGQSSLKFLLLNPAVHFAQVVKECRAVVIAGGTMQPMSDFREQLLACSGVEAGRVVEFSCGHVIPPDNI
LPLIICSGPSNQQLEFTYQRRELPQMVEETGRILCNLCNVVPGGVVCFLPSYEYLRQVHAHWDKTGLLTR
LSVRKKIFQEPKRASQVEQVLMAYSKCIMSCSHSEGHLTGALLLSVVGGKMSEGINFSDDLGRCVVMVGM
PYPNIKSPELQEKMAYLNQTLPRTQGQPLPGTVLIENLCMKAINQSIGRAIRHQRDFASIVLLDHRYARP
SILAKLPAWIRDRVEVKATFGPAFAAVRKFHREKSHPSLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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