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Report for CCDS29018.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29018.1 Public Mus musculus 17 Epcam 23 108 98 CCDS HistoryNCBI Gene:17075Re-query CCDS DB by CCDS ID:29018.1Re-query CCDS DB by GeneID:17075See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29018.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053577.8 ENSMUSP00000061935.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053577.8Link to Ensembl Protein Viewer:ENSMUSP00000061935.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000053577Re-query CCDS DB by Protein ID:ENSMUSP00000061935
Original member Current member EBI ENSMUST00000234623.1 ENSMUSP00000157040.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234623.1Link to Ensembl Protein Viewer:ENSMUSP00000157040.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234623Re-query CCDS DB by Protein ID:ENSMUSP00000157040
Original member Current member NCBI NM_008532.2 NP_032558.2 Accepted alive Link to Nucleotide Sequence:NM_008532.2Link to Protein Sequence:NP_032558.2Re-query CCDS DB by Nucleotide ID:NM_008532Re-query CCDS DB by Protein ID:NP_032558Link to BLAST:NP_032558.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032558.2 315 Q99JW5 315 100% 0 0

Chromosomal Locations for CCDS 29018.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 87636819 87636894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87639896 87640003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87640288 87640528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87641434 87641499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87642102 87642165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87643542 87643643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87646137 87646340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87649614 87649658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87650428 87650469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGGCGGGTCCCCAGGCCCTCGCGTTCGGGCTCCTGCTCGCGGTGGTCACAGCGACGCTGGCCGCGGCTC
AGAGAGACTGTGTCTGTGACAACTACAAGCTGGCAACAAGTTGCTCTCTGAATGAATATGGTGAATGCCA
GTGTACTTCCTATGGTACACAGAATACTGTCATTTGCTCCAAACTGGCGTCTAAATGCTTGGCGATGAAA
GCAGAAATGACTCACAGCAAGTCTGGGAGGAGGATAAAGCCCGAAGGGGCGATCCAGAACAACGATGGGC
TGTACGACCCCGACTGCGACGAGCAGGGGCTCTTCAAAGCCAAGCAGTGCAACGGCACCGCCACGTGCTG
GTGTGTCAACACCGCCGGAGTCCGAAGAACCGACAAGGACACGGAGATCACGTGCTCCGAGCGCGTGAGG
ACCTACTGGATCATCATTGAACTAAAACACAAAGAAAGAGAAAGCCCCTACGACCATCAGAGCTTGCAGA
CTGCGCTTCAAGAGGCGTTCACATCTCGATATAAGCTGAATCAGAAATTTATCAAAAACATTATGTATGA
GAATAATGTTATCACCATTGATCTGATGCAAAACTCTTCTCAGAAAACACAAGACGACGTGGACATAGCT
GATGTGGCTTACTATTTTGAAAAAGATGTGAAGGGGGAGTCCCTGTTCCATTCTTCTAAGAGCATGGACC
TGAGAGTGAACGGAGAGCCGCTCGATCTGGACCCCGGGCAGACTCTGATTTACTACGTTGATGAAAAGGC
ACCCGAGTTCTCCATGCAGGGCCTCACGGCCGGGATCATCGCTGTCATTGTGGTGGTGTCATTAGCAGTC
ATCGCGGGGATTGTTGTCCTGGTTATATCTACAAGGAAGAAATCAGCAAAATATGAGAAGGCTGAGATAA
AGGAGATGGGTGAGATCCACAGAGAGCTTAATGCCTAG

Translation (315 aa):
MAGPQALAFGLLLAVVTATLAAAQRDCVCDNYKLATSCSLNEYGECQCTSYGTQNTVICSKLASKCLAMK
AEMTHSKSGRRIKPEGAIQNNDGLYDPDCDEQGLFKAKQCNGTATCWCVNTAGVRRTDKDTEITCSERVR
TYWIIIELKHKERESPYDHQSLQTALQEAFTSRYKLNQKFIKNIMYENNVITIDLMQNSSQKTQDDVDIA
DVAYYFEKDVKGESLFHSSKSMDLRVNGEPLDLDPGQTLIYYVDEKAPEFSMQGLTAGIIAVIVVVSLAV
IAGIVVLVISTRKKSAKYEKAEIKEMGEIHRELNA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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