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Report for CCDS29023.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29023.1 Public Mus musculus 17 Ppp1r21 23 108 98 CCDS HistoryNCBI Gene:73825Re-query CCDS DB by CCDS ID:29023.1Re-query CCDS DB by GeneID:73825See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29023.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038551.7 ENSMUSP00000048443.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038551.7Link to Ensembl Protein Viewer:ENSMUSP00000048443.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000038551Re-query CCDS DB by Protein ID:ENSMUSP00000048443
Original member Current member NCBI NM_028658.4 NP_082934.3 Accepted alive Link to Nucleotide Sequence:NM_028658.4Link to Protein Sequence:NP_082934.3Re-query CCDS DB by Nucleotide ID:NM_028658Re-query CCDS DB by Protein ID:NP_082934Link to BLAST:NP_082934.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082934.3 780 Q3TDD9-1 780 100% 0 0

Chromosomal Locations for CCDS 29023.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 88530262 88530318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88542845 88542913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88545321 88545467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88547568 88547669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88549494 88549658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88549791 88549849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88550662 88550756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88554850 88554902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88555582 88555731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88558589 88558690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88558777 88558865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88562109 88562245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88565641 88565733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88569080 88569207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88572603 88572755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88575192 88575284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88577138 88577380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88578782 88578814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88580435 88580551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88582415 88582513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88583853 88583981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88587684 88587713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2343 nt):
ATGGCCTCCGCAGAGTTGCAGGGGAAGTACCAGAAGCTGGCTCAGGAGTACTCGAAGCTTCGAGCTCAGA
ATCAGGTTCTGAAGAAAGGTGTTGTGGATGAGCAGGCCAGCTCTGCTGCTCTGAAGGAACAACTGAAAAT
GAAGGACCAGTCCTTGAGGAAACTGCAGCAGGAAATGGACAGTTTGACATTTCGAAATCTGCAGCTTGCC
AAGAGGGTGGAACTCCTTCAAGATGAGCTAGCACTAAGTGAACCTCGAGGCAAGAAAAACAAGAAAAGTG
GTGAATCTTCTTCTCAGTTGAGCCAAGAGCAGAAGAGCGTCTTTGATGAAGACCTGCAAAAGAAAATCGA
GGAGAACGAACGGCTGCACATACAGTTCTTCGAAGCGGACGAGCATCACAGGCACGTGGAAGCGGAGCTG
AGGAGTCGGCTGGCCACTCTTGAAACAGAAGCTGCTCAGCACCAAGCTGTGATCGACGGCCTGACCCGGA
AGTACATGGAGACCATTGAGAAACTCCAGAGCGACAAGGCAAAGCTAGAAGTAAAATCTCAGACTCTAGA
AAAGGAGGCCAAGGAATGTCGACTGCGAACAGAAGAATGTCAATTACAGTTAAAGAATCTTCATGAAGAT
TTGTCAGGTAGATTAGAGGAATCCTTATCAATCATCAATGAAAAAGTCCCTTTTAATGATACAAAGTGTC
ATCTGTACAACGCTCTCAATGTTCCCCTGCACAATAGGCGACACCAGCTGAAGATGCGAGATATAGCTGG
GCAGGCCCTGGCTTTTGTTCAGGATCTTGTACCGGCTCTTCTGAACTTTCACACCTATACAGAACAGAGG
ATTCAAATTTTCCCTGTTGATTCTGCCATAGACACTATATCACCATTGAATCAGAAGTTCTCCCAATACC
TTCATGAAAACGCATCGTATGTCCGCCCCCTTGAGGAAGGAATGCTGCACTTATTCGAGAGCATTACAGA
GGATACTGTGACTGTCCTGGAGACAACTGTGAAATTGAAAATGTTTTCAGATCATCTAACTTCCTACGTA
CGCTTCCTGAGGAAGATCCTTCCTTATCAGTTAAAAAGTTTAGAAGAAGAGTGTGAATCTTCCCTCTGCA
CACCTGCACTGAGAGCCAGGAACCTGGAGCTGTCCCAGGACATGAAGACGATGACAGCCGTGTTTGAGAA
GCTGCAGACGTATGTCACTCTCCTCGCCTTGCCAAGTACAGAGCCAGATGGACTCCTTCGAACAAACTAC
ACTTCCGTCTTAACAAATGTTGGTGCTGCTCTGCATGGATTTCATGATGTCATGAAAGATATTTCCAAAC
ACTATAGTCAGAAGGCTTCCATAGAGCATGAAATTCCAACAGCAACACAGAAGCTAGTAACGACTAACGA
CTGCATCTTGTCCTCAGCGGTGACGTTAACAAACGGAGCGGGCAAGATTGCGTCTTTCTTCGGCAACAAC
GTGGACTACTTCATTGCTTCACTGAGCTATGGGCCCAAGACAGCCAGCGGATTCATTAGTCCCCTTTCGG
CTGAGTGCATGCTGCAGTACAAGAAGAAGGCTGCTGCCTATATGAAGTCTTTGAGAACGCCCCTCGCAGA
GTCTGTGCCTTACGGGGAAGCTGTGGCCAACCGCCGGGTTCTCCTCAGCTCTACAGAGAGTCGGGAAGGC
CTTGCACAGCAGGTTCAGCAGAGTTTGGAAAAGATTTCTAAGCTGGAGCAGGAGAAAGAACATTGGATGC
TAGAAGCACAGTTAGCCAAAATCAAGCTGGAGAAAGAAAACCAACGGATTGCAGACAGGCTGCGGGGCAC
CACCAGTGCCCAGCTGCCTGGGCTGGCCCAGGAGAATGCGACTGTGCCCATTGCTTCCAGCCAGGAGGAG
GCTGCAGCCAAGGTCCTGACAGAGCCTGTGCAGAGCACCAGTCTGGTTGGGATGTTAACCAGGACGCCAG
ACAGTGAGGCTCCGGATGTTGAGTCCCGTGAAGACCTAATTAAGAGTCACTACATGGCCAGGATAGCGGA
GCTCACATCTCAGCTGCAGCTGGCTGACAGTAAGTCAGTGCACTTCTACGCCGAGTGCCGTGCGCTCTCT
AAGAGACTAGCCCTGGCGGAGAAGTCGAAGGAGACACTGACAGAGGAGATGAGGCTAGCCAGTCAGAACA
TCAGCAGGCTTCAGGACGAGCTGATGACCACCAAGCGGAGCTACGAGGATCAGCTGAGCATGATGAGCGA
CCACCTATGCAGCATGAACGAGACCCTGTCCAAACAGAGGGAGGAGATTGACACGCTCAAGATGGCCAGT
AAGGGGAATTCTAAGAAGACCCGGAATCGGTAG

Translation (780 aa):
MASAELQGKYQKLAQEYSKLRAQNQVLKKGVVDEQASSAALKEQLKMKDQSLRKLQQEMDSLTFRNLQLA
KRVELLQDELALSEPRGKKNKKSGESSSQLSQEQKSVFDEDLQKKIEENERLHIQFFEADEHHRHVEAEL
RSRLATLETEAAQHQAVIDGLTRKYMETIEKLQSDKAKLEVKSQTLEKEAKECRLRTEECQLQLKNLHED
LSGRLEESLSIINEKVPFNDTKCHLYNALNVPLHNRRHQLKMRDIAGQALAFVQDLVPALLNFHTYTEQR
IQIFPVDSAIDTISPLNQKFSQYLHENASYVRPLEEGMLHLFESITEDTVTVLETTVKLKMFSDHLTSYV
RFLRKILPYQLKSLEEECESSLCTPALRARNLELSQDMKTMTAVFEKLQTYVTLLALPSTEPDGLLRTNY
TSVLTNVGAALHGFHDVMKDISKHYSQKASIEHEIPTATQKLVTTNDCILSSAVTLTNGAGKIASFFGNN
VDYFIASLSYGPKTASGFISPLSAECMLQYKKKAAAYMKSLRTPLAESVPYGEAVANRRVLLSSTESREG
LAQQVQQSLEKISKLEQEKEHWMLEAQLAKIKLEKENQRIADRLRGTTSAQLPGLAQENATVPIASSQEE
AAAKVLTEPVQSTSLVGMLTRTPDSEAPDVESREDLIKSHYMARIAELTSQLQLADSKSVHFYAECRALS
KRLALAEKSKETLTEEMRLASQNISRLQDELMTTKRSYEDQLSMMSDHLCSMNETLSKQREEIDTLKMAS
KGNSKKTRNR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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