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Report for CCDS29119.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29119.1 Public Mus musculus 18 Bin1 23 108 98 CCDS HistoryNCBI Gene:30948Re-query CCDS DB by CCDS ID:29119.1Re-query CCDS DB by GeneID:30948See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29119.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025239.8 ENSMUSP00000025239.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025239.8Link to Ensembl Protein Viewer:ENSMUSP00000025239.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000025239Re-query CCDS DB by Protein ID:ENSMUSP00000025239
Original member Current member NCBI NM_009668.2 NP_033798.1 Accepted alive Link to Nucleotide Sequence:NM_009668.2Link to Protein Sequence:NP_033798.1Re-query CCDS DB by Nucleotide ID:NM_009668Re-query CCDS DB by Protein ID:NP_033798Link to BLAST:NP_033798.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033798.1 588 O08539-1 588 100% 0 0

Chromosomal Locations for CCDS 29119.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 32377407 32377490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32406100 32406180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32412421 32412475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32412617 32412711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32413095 32413190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32414183 32414290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32414945 32415037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32419843 32419928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32420069 32420144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32421878 32421960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32424820 32424967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32426224 32426352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32429196 32429303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32429700 32429723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32430750 32430857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32431671 32431742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32431983 32432093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32432324 32432425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32435135 32435242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1767 nt):
ATGGCAGAGATGGGGAGCAAGGGGGTGACGGCGGGGAAGATCGCCAGCAACGTACAGAAGAAGCTGACCC
GAGCGCAGGAGAAGGTCCTGCAGAAACTGGGGAAGGCGGACGAGACGAAGGACGAGCAGTTTGAGCAGTG
TGTCCAGAACTTCAATAAGCAGCTGACAGAGGGTACCCGGCTGCAGAAGGATCTTCGGACCTATCTGGCT
TCTGTTAAAGCGATGCACGAAGCCTCCAAGAAGCTGAGTGAGTGTCTTCAGGAGGTGTATGAGCCCGAGT
GGCCTGGCAGGGATGAAGCAAACAAGATTGCAGAGAACAATGACCTACTCTGGATGGACTACCACCAGAA
GCTGGTGGACCAGGCTCTGCTGACCATGGACACCTACCTAGGCCAGTTCCCTGATATCAAGTCGCGCATT
GCCAAGCGGGGGCGGAAGCTGGTGGACTATGACAGTGCCCGGCACCACTATGAGTCTCTTCAAACCGCCA
AAAAGAAGGATGAAGCCAAAATTGCCAAGCCTGTCTCGCTGCTTGAGAAAGCCGCCCCCCAGTGGTGCCA
AGGCAAACTACAGGCTCATCTTGTAGCTCAAACTAACCTGCTCCGAAATCAGGCAGAAGAGGAGCTCATC
AAAGCCCAGAAGGTGTTCGAGGAGATGAACGTGGATCTGCAGGAGGAGCTGCCATCCCTGTGGAACAGCC
GTGTAGGTTTCTATGTCAACACGTTCCAGAGCATCGCGGGTCTGGAGGAAAACTTCCATAAAGAGATGAG
TAAGCTCAATCAGAACCTCAATGATGTCCTGGTCAGCCTAGAGAAGCAGCACGGGAGCAACACCTTCACA
GTCAAGGCCCAACCCAGTGACAATGCCCCTGAGAAAGGGAACAAGAGCCCGTCACCTCCTCCAGATGGCT
CCCCTGCTGCTACCCCTGAGATCAGAGTGAACCATGAGCCAGAGCCGGCCAGTGGGGCCTCACCCGGGGC
TACCATCCCCAAGTCCCCATCTCAGCTCCGGAAAGGCCCACCTGTCCCTCCGCCTCCCAAACACACCCCA
TCCAAGGAGATGAAGCAGGAGCAGATTCTCAGCCTTTTTGATGACGCATTTGTCCCTGAGATCAGCGTGA
CCACCCCCTCCCAGTTTGAGGCCCCTGGGCCTTTCTCAGAGCAGGCCAGTCTACTAGACCTGGACTTCGA
GCCCCTTCCACCAGTGGCGAGCCCCGTGAAGGCACCCACACCCTCTGGTCAGTCAATCCCATGGGACCTC
TGGGAGCCCACAGAGAGTCAAGCTGGCATCCTGCCTTCCGGGGAGCCCAGTTCTGCTGAGGGCAGCTTTG
CTGTGGCCTGGCCCAGCCAGACAGCCGAGCCAGGGCCCGCCCAACCAGCAGAGGCCTCCGAGGTGGTGGG
TGGAGCCCAGGAGCCAGGGGAGACAGCAGCCAGTGAAGCAACCTCCAGCTCTCTTCCGGCTGTGGTGGTG
GAGACCTTCTCCGCAACTGTGAATGGGGCGGTGGAGGGCAGCGCTGGGACTGGACGCTTGGACCTGCCCC
CGGGATTCATGTTCAAGGTTCAAGCCCAGCATGATTACACGGCCACTGACACTGATGAGCTGCAACTCAA
AGCTGGCGATGTGGTGTTGGTGATTCCTTTCCAGAACCCAGAGGAGCAGGATGAAGGCTGGCTCATGGGT
GTGAAGGAGAGCGACTGGAATCAGCACAAGGAACTGGAGAAATGCCGCGGCGTCTTCCCGGAGAATTTTA
CAGAGCGGGTGCAGTGA

Translation (588 aa):
MAEMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQKDLRTYLA
SVKAMHEASKKLSECLQEVYEPEWPGRDEANKIAENNDLLWMDYHQKLVDQALLTMDTYLGQFPDIKSRI
AKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKPVSLLEKAAPQWCQGKLQAHLVAQTNLLRNQAEEELI
KAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFT
VKAQPSDNAPEKGNKSPSPPPDGSPAATPEIRVNHEPEPASGASPGATIPKSPSQLRKGPPVPPPPKHTP
SKEMKQEQILSLFDDAFVPEISVTTPSQFEAPGPFSEQASLLDLDFEPLPPVASPVKAPTPSGQSIPWDL
WEPTESQAGILPSGEPSSAEGSFAVAWPSQTAEPGPAQPAEASEVVGGAQEPGETAASEATSSSLPAVVV
ETFSATVNGAVEGSAGTGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMG
VKESDWNQHKELEKCRGVFPENFTERVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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