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Report for CCDS29143.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29143.1 Public Mus musculus 18 Paip2 23 108 98 CCDS HistoryNCBI Gene:67869Re-query CCDS DB by CCDS ID:29143.1Re-query CCDS DB by GeneID:67869See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29143.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041314.16 ENSMUSP00000036021.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041314.16Link to Ensembl Protein Viewer:ENSMUSP00000036021.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000041314Re-query CCDS DB by Protein ID:ENSMUSP00000036021
Original member Current member EBI ENSMUST00000236868.1 ENSMUSP00000157456.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236868.1Link to Ensembl Protein Viewer:ENSMUSP00000157456.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236868Re-query CCDS DB by Protein ID:ENSMUSP00000157456
Original member Current member EBI ENSMUST00000235400.1 ENSMUSP00000157519.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235400.1Link to Ensembl Protein Viewer:ENSMUSP00000157519.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235400Re-query CCDS DB by Protein ID:ENSMUSP00000157519
Original member Current member EBI ENSMUST00000236020.1 ENSMUSP00000157742.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236020.1Link to Ensembl Protein Viewer:ENSMUSP00000157742.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236020Re-query CCDS DB by Protein ID:ENSMUSP00000157742
Original member Current member EBI ENSMUST00000235210.1 ENSMUSP00000157936.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235210.1Link to Ensembl Protein Viewer:ENSMUSP00000157936.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235210Re-query CCDS DB by Protein ID:ENSMUSP00000157936
Original member Current member EBI ENSMUST00000236666.1 ENSMUSP00000158160.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236666.1Link to Ensembl Protein Viewer:ENSMUSP00000158160.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236666Re-query CCDS DB by Protein ID:ENSMUSP00000158160
Original member Current member EBI ENSMUST00000236414.1 ENSMUSP00000158248.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236414.1Link to Ensembl Protein Viewer:ENSMUSP00000158248.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236414Re-query CCDS DB by Protein ID:ENSMUSP00000158248
Original member Current member EBI ENSMUST00000235476.1 ENSMUSP00000158496.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235476.1Link to Ensembl Protein Viewer:ENSMUSP00000158496.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235476Re-query CCDS DB by Protein ID:ENSMUSP00000158496
Original member Current member NCBI NM_001357470.1 NP_001344399.1 Accepted alive Link to Nucleotide Sequence:NM_001357470.1Link to Protein Sequence:NP_001344399.1Re-query CCDS DB by Nucleotide ID:NM_001357470Re-query CCDS DB by Protein ID:NP_001344399Link to BLAST:NP_001344399.1
Original member Current member NCBI NM_001357471.1 NP_001344400.1 Accepted alive Link to Nucleotide Sequence:NM_001357471.1Link to Protein Sequence:NP_001344400.1Re-query CCDS DB by Nucleotide ID:NM_001357471Re-query CCDS DB by Protein ID:NP_001344400Link to BLAST:NP_001344400.1
Original member Current member NCBI NM_001357472.1 NP_001344401.1 Accepted alive Link to Nucleotide Sequence:NM_001357472.1Link to Protein Sequence:NP_001344401.1Re-query CCDS DB by Nucleotide ID:NM_001357472Re-query CCDS DB by Protein ID:NP_001344401Link to BLAST:NP_001344401.1
Original member Current member NCBI NM_001357473.1 NP_001344402.1 Accepted alive Link to Nucleotide Sequence:NM_001357473.1Link to Protein Sequence:NP_001344402.1Re-query CCDS DB by Nucleotide ID:NM_001357473Re-query CCDS DB by Protein ID:NP_001344402Link to BLAST:NP_001344402.1
Original member Current member NCBI NM_026420.3 NP_080696.1 Accepted alive Link to Nucleotide Sequence:NM_026420.3Link to Protein Sequence:NP_080696.1Re-query CCDS DB by Nucleotide ID:NM_026420Re-query CCDS DB by Protein ID:NP_080696Link to BLAST:NP_080696.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344399.1 124 Q9D6V8 124 100% 0 0
NP_001344400.1 124 Q9D6V8 124 100% 0 0
NP_001344401.1 124 Q9D6V8 124 100% 0 0
NP_001344402.1 124 Q9D6V8 124 100% 0 0
NP_080696.1 124 Q9D6V8 124 100% 0 0

Chromosomal Locations for CCDS 29143.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 35610897 35611034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35613323 35613502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35616199 35616255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (375 nt):
ATGAAAGATCCAAGTCGCAGCAGTACTAGCCCAAGCATCATCAATGACGATGTGATTATTAACGGTCATT
CTCATGAAGAGGATAATCCATTTGCAGAGTACATGTGGATGGAAAATGAAGAGGAATTCAACAGACAAAT
AGAAGAGGAGTTGTGGGAAGAAGAATTTATTGAACGCTGTTTCCAAGAAATGCTGGAAGAGGAAGAAGAA
CATGAATGGTTTATTCCAGCTCGAGATCTCCCACAAACTATGGACCAAATCCAAGACCAGTTTAATGACC
TTGTTATCAGTGATGGCTCTTCTCTGGAAGATCTTGTGGTCAAGAGCAATCTGAATCCCAATGCAAAGGA
GTTTGTTCCTGGGGTGAAGTACTGA

Translation (124 aa):
MKDPSRSSTSPSIINDDVIINGHSHEEDNPFAEYMWMENEEEFNRQIEEELWEEEFIERCFQEMLEEEEE
HEWFIPARDLPQTMDQIQDQFNDLVISDGSSLEDLVVKSNLNPNAKEFVPGVKY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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