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Report for CCDS29154.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
29154.1 |
Public |
Mus musculus |
18 |
Slc4a9 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:240215](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:29154.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:240215](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 18 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 29154.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000074298.12 |
ENSMUSP00000073910.6 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000074298.12](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000073910.6](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000074298](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000073910](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000235181.1 |
ENSMUSP00000157460.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000235181.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000157460.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000235181](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000157460](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_172830.2 |
NP_766418.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_172830.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_766418.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_172830](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_766418](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_766418.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 29154.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2643 nt): ATGAAGCTGCCAGGGCAGGGGGATTTTGAAAGCTCTGATGCTCATGAAAATGCTCACTCAGAGGAACCGG ACAGTGGCCTAGGCCCTGGCCCTGGCCTTAATGGACCCTCAGGCATAGACATTGGGGAATCTCAGGTGTC TAAGGACCCTCTGCTCTTCATTCAACTAAATGAGCTGCTGGGTTGGCCCCAGGCACTAGAGTGGCGAGAG ACAGGCAGGTGGCTGCTGTTCGAGGAAAAGCTAGACATGGGCGCGGGCCGGTGGAGTGCTCCCCATGTGC CTACCCTGGAACTCCCCAGCCTCCAGAAGCTTCGAAGTCTGTTGGCCGAGGGCATTGTCCTGCTAGACTG TCAGGCTCAGAGCCTCCTGGAGCTTGTGGAGCAGGTAGTCAGTGGGGAGTCACTGAGCCCAGAACTGAGA GGACAGCTTCAGGCCTTGCTCCTGCAGAGACCCCAGCACCACATCCAGACCATGGGCATCAGGCCCTGCA GAGAGTCCAATGCTTTCAGAAAGGCTTCTCGTGATGAGGACGCCCCACTGAAGCACCAGAACCCTTTGAG ACAGAAGCTGCCCGCTGGAGCTGAGGCAGCGGCAGTGTTGGCAGGAGAGCTGGGCTTCCTGGAACAGCCA CTAGGGGCCTTCGTAAGACTGCGGAATCCTATAGTGCTGGAGCCTCTTACAGAGATGATCTTGCCCAGCA GATTTTTCTGCCTCCTCTTGGGTCCTCCCACCCTGGGAAGGAGCTACCATGAGATGGGACGGGCAGCTGC TGTCCTCCTCAGTGACCCGCAATTCCAGTGGTCAGTTCGTCGGGCAAGCCATCTTCCTGACCTTCTGGCA GCTCTGGATGCCTTCCTGCAGGAGGTGACAGCTCTACCCCCGGGCCGGTGGGACCGGACAGCCCGGATTC CCCCACCCAAATACCTACCATCTCAGCACAAAAGATTCCCCTCGAAACTGCAGGAGGTCACCAGCCTCTC CCGACAGAGTGCTGCCCTAGCAGAAGACAAGCACCATCACGGACCGCACACACCCATCCCAGAATTGCAA AGGACAGGCAGTGTTTCTCAGCTGTGTTCTACATTTACCTGGCCACAGTCACAAACGCCATCACTTTTGG GGGTCTTCTGGGAGATGCCACTGAAGGTGCCCAGAGATTACAGCCTGGATTATCTGCCCTTCCGCCTATG GGTCGGCATCTGGGTGACCGCATTTTGCCTGGCACTGGTGGCTACGGAGGCCAGCTTGCTGGTGCGCTAC TTCACCAGATTCACAGAGGAAGGATTCTGTGCCCTCATCAGCCTCATCTTCATCTATGATGCCATGGGGA AGATGCTGAATTTGATCCGTGCCTATCCAATCCAAAGGCCAGGGTCTTCTGCCTATGGTTGCTTCTGTCA ATACCCAGGCACAGGAGGAAACACGTCTGAATGGACGAGTGCAAAGCTCAAAGACACAGAGGACATCTTA AGTGTGCCAGGTCTAGTCAATGCTTCCTTCCTGCCTCCACCTGAGTGCATCCGGCAAGGAGGTCACCCTC TCGGCCCCAGCTGTCACACGGTGCCAGACATCGCCTTCTTCTCCCTTCTCCTCTTCTTTACTTCTTTCCT TTGTGCCATTGCTCTCAAGCACATAAAGAACAGCCGCTTCTTCCCCTCTGTGGTGCGCAAGGTGTTGGGC GACTTTTCCTCAGTCCTGGCCATCCTGCTGGGCTGTGGCCTTGACACCTTCCTGGGCCTAGCCACACCGA AGCTCTTGGTGCCCACAGAATTCAAGCCTACACTCTCTGGGCGTGGCTGGCTGGTGTCTCCTTTTGGAGC TAACCCCTGGTGGCTGAGTGTGGCCGCTGCCTTGCCCGCTCTACTGCTGTCAATCCTTATCTTCATGGAC CAGCAGATCACGGCAGTCATCCTCAACCGTGCAGAATACAGACTGCAGAAGGGAGCTGGCTTCCACCTGG ACCTCTTCTGTGTGGCTGTTTTGATGCTGTTCACATCGGCACTTGGGCTGCCATGGTACGTCTCAGCCAC TGTCATCTCCTTGGCCCACATAGACAGTCTTCGGAGAGAGAGCAAAGCCTGCATCCCTGGAGAAGCCCCC AATTTCCTGGGCATCAGGGAACAGAGGCTGACGGGCTTGGTGGTGTTCGTCCTTACAGGTGTCTCCATCT TCCTGGCACCTGTGCTCAAGTTCATCCCGATGCCCGTGCTCTACGGCATCTTCCTGTACATGGGGGTAGC CGCGCTCAGCAGCATCCAGTTCGTGAAGAGAGTGCAGCTATTGTTGATGCCAAGGAAACATCAGCCAGAC ATGCTGCTCCTGCGGCATGTGCCTCTGAGCAGAGTTCACCTCTTCACAGCCATCCAGCTTGCCTGCCTAG GTCTGCTTTGGGTAGTCAAGTCTACCCCTGCAGCCATTGTCTTCCCACTCATGTTACTGGGCCTGGTGGC CATCCGGAAGGCACTGGAGTGGGTCTTCTCACCACAGGAACTCCTCTGGCTGGATGAGCTGATGCCAGAG GAGGAGGAGACCATCCCCGAGAACAGGTCCGAGCCAGAGCACTTGTTCAGTGGAAATGACAGTGAAGATT CAGAACTGATGTATCAGCCCAAGGCTCCAGAAATCAACATCTCTGTGAATTAG
Translation (880 aa): MKLPGQGDFESSDAHENAHSEEPDSGLGPGPGLNGPSGIDIGESQVSKDPLLFIQLNELLGWPQALEWRE TGRWLLFEEKLDMGAGRWSAPHVPTLELPSLQKLRSLLAEGIVLLDCQAQSLLELVEQVVSGESLSPELR GQLQALLLQRPQHHIQTMGIRPCRESNAFRKASRDEDAPLKHQNPLRQKLPAGAEAAAVLAGELGFLEQP LGAFVRLRNPIVLEPLTEMILPSRFFCLLLGPPTLGRSYHEMGRAAAVLLSDPQFQWSVRRASHLPDLLA ALDAFLQEVTALPPGRWDRTARIPPPKYLPSQHKRFPSKLQEVTSLSRQSAALAEDKHHHGPHTPIPELQ RTGSVSQLCSTFTWPQSQTPSLLGVFWEMPLKVPRDYSLDYLPFRLWVGIWVTAFCLALVATEASLLVRY FTRFTEEGFCALISLIFIYDAMGKMLNLIRAYPIQRPGSSAYGCFCQYPGTGGNTSEWTSAKLKDTEDIL SVPGLVNASFLPPPECIRQGGHPLGPSCHTVPDIAFFSLLLFFTSFLCAIALKHIKNSRFFPSVVRKVLG DFSSVLAILLGCGLDTFLGLATPKLLVPTEFKPTLSGRGWLVSPFGANPWWLSVAAALPALLLSILIFMD QQITAVILNRAEYRLQKGAGFHLDLFCVAVLMLFTSALGLPWYVSATVISLAHIDSLRRESKACIPGEAP NFLGIREQRLTGLVVFVLTGVSIFLAPVLKFIPMPVLYGIFLYMGVAALSSIQFVKRVQLLLMPRKHQPD MLLLRHVPLSRVHLFTAIQLACLGLLWVVKSTPAAIVFPLMLLGLVAIRKALEWVFSPQELLWLDELMPE EEETIPENRSEPEHLFSGNDSEDSELMYQPKAPEINISVN
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