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Report for CCDS29184.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29184.1 Public Mus musculus 18 Pcdhb18 23 108 98 CCDS HistoryNCBI Gene:93889Re-query CCDS DB by CCDS ID:29184.1Re-query CCDS DB by GeneID:93889See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29184.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055949.3 ENSMUSP00000052113.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055949.3Link to Ensembl Protein Viewer:ENSMUSP00000052113.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000055949Re-query CCDS DB by Protein ID:ENSMUSP00000052113
Original member NCBI NM_053143.2 NP_444373.1 Updated not alive Link to Nucleotide Sequence:NM_053143.2Link to Protein Sequence:NP_444373.1Re-query CCDS DB by Nucleotide ID:NM_053143Re-query CCDS DB by Protein ID:NP_444373
Current member NCBI NM_053143.3 NP_444373.1 Accepted alive Link to Nucleotide Sequence:NM_053143.3Link to Protein Sequence:NP_444373.1Re-query CCDS DB by Nucleotide ID:NM_053143Re-query CCDS DB by Protein ID:NP_444373Link to BLAST:NP_444373.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444373.1 792 Q91Y02 792 100% 0 0

Chromosomal Locations for CCDS 29184.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37489619 37491997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2379 nt):
ATGGCAGCCAGAGGATCATGTGTCTCCAGACAAAGGCAAGTGCTATTTCTCTTCCTGCTCGGGGGTCTGT
GTTTGGCAGGTTCTGAGCTTGGACGTTATTCAGTGACTGAGGAAACAGAAAGGGGATCATTTGTGGCGAA
CCTAGCAAAGGATCTAGGGCTAGGGGTGGAAGCACTGGCTGCAAAGAGAACTAGGGTGGTTTGTGATGAT
AACAAACAGCACTTGTTTCTGGATTCTCACACTGGAGATTTGCTCACAAATGAGAAACTGGACCGTGAGA
AGCTGTGCGGCCCCACAGAGCCCTGCATGCTTTATTTCCAAATTTTAATGGATAACCCCTTTCAGATTTA
CCGGGCTGAGCTGAGAATTCTGGATATAAATGATCACTCACCCATATTCCAGGACAAAAAGATGATTTTA
AAAATACTAGAAAACACAGCTGTGGGAACAACATTTCGATTAGAAAGAGCACAAGACTCAGATGGCGGAC
GGAATGGCATCCAAAACTACACCATCAGCCCCAACACTTTTTTTCATATTACCGTTCATAACAGCGATGA
AGGAATGATATATCCTGAGCTTGTGCTAGACAAAGCTCTGGATTGGGAGGGGCAGCCAGAGTTCAGTCTA
ACACTCACTGCACTTGATGGTGGGTCTCCACCCAGGTCTGGGACAGCCACTATACATATTCTGGTTTTGG
ACATCAATGATAATGCCCCACAGTTTCCCCAAGAACTGTATGAAATCCAGGCTCCAGAAAACAGTCCAAT
AGGCCTTGTTGTCATTAAAGTCACCGGAGAAGATGTAGACTCTGGAGTCAATGCAGAAATATCCTATTCG
TTTTTTGATGCTTCTGAGGATATTCGAGCAACCTTTCAAATCAATCCTTTCTCTGGGGAAATCACTCTCA
AAGCCTTGCTTGACTATGAGTTCATAAAGTCCTATAAGTTAAATGTACAAGCAGTTGATGGTGGGGGCCT
TTCGGCGAGATGTACGGTTCTAGTGCGGGTTTTAGACGTTAATGACAACGCCCCTGAACTGATCATGTCA
TCACTTGTCAACGAAGTTGTTGAGAACTCACCTGAAACCGTGCTGGCAGTTTTTAGGATTAATGACAGAG
ACTCTGGAGAGAATGGAAAAATGGTTTGCCACATTCAAGAAAATCTACCTTTCCTTTTAAAACCTTCCGT
GGACAATTTTTACATCCTAATGACAGAAGGAGCACTGGACAGAGAGAGCAGAGCTGAATACAACATCACC
ATCACTGTCTCTGACCTGGGCACACCCAGGCTCACAACCCAGCACACCATAAGAGTACAGGTATCTGATA
TCAATGACAACGCCCCCGCCTTCAACCAAACCTCATACACCCTGTTCGTTCGCGAGAACAACAGCCCCGC
CATGCACATAGGCACCATCAGCGCCACAGACTCTGACGCTGGCTCCAATGCCCACATCACCTACTCGCTG
CTGCCAACCCAAGACCTACAGATGACCCTCACCTCGCTGGTCTCTATCAATGCTGACAACGGGCAACTGT
TTGCAATCAAGGCTCTGGACTATGAAGCCTTACAGGCCTTCGAGTTCCACGTGGGTGCCACAGACCGAGG
CTCACCTGAGCTCAGCAGCCAGGCTCTAGTGCGCGTGGTGGTGCTGGACGACAATGACAATGCGCCCTTC
GTGCTCTACCCGATGCAGAACGCTTCTGCGCCCTACACCGAGCTGCTGCCCAGGACCGCAGAGCCCGGCT
ACCTGGTCACCAAGGTGGTGGCTGTGGACCGCGACTCTGGACAGAATGCCTGGCTGTCATTCCAGCTACT
CAAGGCCACGGAGCCCGGGCTGTTCAGTGTGTGGGCTCACAATGGCGAGGTGCGCACCACCAGGCTGCTG
AGCGAGCGCGATGTGCCCAAGCACAGGCTGCTGCTGCTAGTCAAGGACAATGGCGATCCTCCGCGCTCTG
CCAGTGTCACACTGCAGGTGCTGCTGGTGGATGGCTTCTCTCAGCCCTACCTGCCTCTGCCAGAGGTGGC
GCACAATCCCACTCAAGGGGAAGAGGATGTGCTCACGCTGTACCTGGTCATAGCCTTGGCATCTGTGTCT
TCTCTCTTCCTCTTGTCTGTGCTGCTGTTTGTGGGGGTGAGACTGTGCAGGAGGGCCAGGGCGGCCTCTC
TTGGGGGCTGCTCCGTGCCAGAGGGACACTTTCCTGGACACCTTGTGGACGTCAGCGGTACAGGAACACT
GTCCCAGAACTACCAATATGAGGTGTGTCTAATGGGAGGTTCCTCTGGTACCAGTGATTTCAAGTTCTTG
AAATCGATTTACCCTGAAGTTCATGCTTATAGTTCCCAGGACAATAGTGATGGGAATCCCACATTTTGA

Translation (792 aa):
MAARGSCVSRQRQVLFLFLLGGLCLAGSELGRYSVTEETERGSFVANLAKDLGLGVEALAAKRTRVVCDD
NKQHLFLDSHTGDLLTNEKLDREKLCGPTEPCMLYFQILMDNPFQIYRAELRILDINDHSPIFQDKKMIL
KILENTAVGTTFRLERAQDSDGGRNGIQNYTISPNTFFHITVHNSDEGMIYPELVLDKALDWEGQPEFSL
TLTALDGGSPPRSGTATIHILVLDINDNAPQFPQELYEIQAPENSPIGLVVIKVTGEDVDSGVNAEISYS
FFDASEDIRATFQINPFSGEITLKALLDYEFIKSYKLNVQAVDGGGLSARCTVLVRVLDVNDNAPELIMS
SLVNEVVENSPETVLAVFRINDRDSGENGKMVCHIQENLPFLLKPSVDNFYILMTEGALDRESRAEYNIT
ITVSDLGTPRLTTQHTIRVQVSDINDNAPAFNQTSYTLFVRENNSPAMHIGTISATDSDAGSNAHITYSL
LPTQDLQMTLTSLVSINADNGQLFAIKALDYEALQAFEFHVGATDRGSPELSSQALVRVVVLDDNDNAPF
VLYPMQNASAPYTELLPRTAEPGYLVTKVVAVDRDSGQNAWLSFQLLKATEPGLFSVWAHNGEVRTTRLL
SERDVPKHRLLLLVKDNGDPPRSASVTLQVLLVDGFSQPYLPLPEVAHNPTQGEEDVLTLYLVIALASVS
SLFLLSVLLFVGVRLCRRARAASLGGCSVPEGHFPGHLVDVSGTGTLSQNYQYEVCLMGGSSGTSDFKFL
KSIYPEVHAYSSQDNSDGNPTF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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