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Report for CCDS29311.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29311.1 Public Mus musculus 18 Rax 23 108 98 CCDS HistoryNCBI Gene:19434Re-query CCDS DB by CCDS ID:29311.1Re-query CCDS DB by GeneID:19434See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29311.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025396.4 ENSMUSP00000025396.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025396.4Link to Ensembl Protein Viewer:ENSMUSP00000025396.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000025396Re-query CCDS DB by Protein ID:ENSMUSP00000025396
Original member Current member NCBI NM_013833.2 NP_038861.2 Accepted alive Link to Nucleotide Sequence:NM_013833.2Link to Protein Sequence:NP_038861.2Re-query CCDS DB by Nucleotide ID:NM_013833Re-query CCDS DB by Protein ID:NP_038861Link to BLAST:NP_038861.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038861.2 342 O35602 342 100% 0 0

Chromosomal Locations for CCDS 29311.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 65935004 65935489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65938020 65938273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65938526 65938814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1029 nt):
ATGCACCTGCCGGGCTGCGCGCCAGCCATGGCGGACGGGAGCTTCTCGCTCGCTGGCCACCTGCTCCGCA
GCCCGGGCGGGAGCACGTCGCGTTTGCACAGCATCGAAGCCATCCTGGGCTTTACCAAGGAAGACGGCAT
CCTAGACACCTTTCCTGCAGAGAGGAGCTCCAGGAGCTCGAAAGAGCGGGATCCCAGGCTGGGCGCGCAG
CCTGCCTGCCCCAAGGCGCCAGCCGGAGGCTCCGAGTCTTCCCCACCAGCAGCCCCGGGATTCGTCCCGG
AGTACGAAGCTACTAGGCCCTGCTACCCCAAGGAGCAAGGAGAAGCACGTCCGAGCCCAGGACTCTCGGT
TGGGCCAGCAGCAGGCGACTCGAAGCTGTCGGAGGAGGAACCTCCCAAGAAGAAGCATCGACGCAACCGC
ACGACGTTCACCACTTACCAACTGCACGAGCTGGAGCGCGCCTTCGAGAAGTCCCACTACCCCGACGTGT
ACAGCCGCGAAGAGCTGGCCGGCAAGGTTAACCTACCCGAGGTTCGGGTCCAGGTATGGTTCCAGAACCG
ACGGGCTAAGTGGAGGCGCCAGGAGAAACTGGAAGTGTCGTCCATGAAGCTGCAGGATTCTCCCCTCCTC
TCCTTCAGCCGCTCCCCGCCTTCCTCGGCACTGGCCCCGCTGGGAACCGGCCCGGGCAGCGGGAGCGGAC
CTCCGGGGAGCGCCCTGCCGCTGGAGCCGTGGCTTGGGCCACCGCTGCCCGGAGGAGGCGCCACAGCGCT
GCAGAGCCTGCCGGGATTCGGGCCGCCGGGGCAGGGTCTCCCGGCCAGCTACACGCCACCACCGCCCTTC
CTGAACTCCGCGCCCCTGGGTCCAGGTCTGCAGCAGCTCGGGCCACCGCCCGCGTACCCCTGCGCGCCGG
CATTCGGGGACAAGTTCTCGCTGGAAGAGGCGTACCCGCGCAACAGCAGCATCGCCGCTCTGCGCCTGAA
GGCCAAAGAGCACATCCAGGCCATCGGAAAGCCCTGGCAAGCCCTCTAG

Translation (342 aa):
MHLPGCAPAMADGSFSLAGHLLRSPGGSTSRLHSIEAILGFTKEDGILDTFPAERSSRSSKERDPRLGAQ
PACPKAPAGGSESSPPAAPGFVPEYEATRPCYPKEQGEARPSPGLSVGPAAGDSKLSEEEPPKKKHRRNR
TTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEVSSMKLQDSPLL
SFSRSPPSSALAPLGTGPGSGSGPPGSALPLEPWLGPPLPGGGATALQSLPGFGPPGQGLPASYTPPPPF
LNSAPLGPGLQQLGPPPAYPCAPAFGDKFSLEEAYPRNSSIAALRLKAKEHIQAIGKPWQAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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