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Report for CCDS29339.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29339.1 Public Mus musculus 18 Me2 23 108 98 CCDS HistoryNCBI Gene:107029Re-query CCDS DB by CCDS ID:29339.1Re-query CCDS DB by GeneID:107029See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29339.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025439.4 ENSMUSP00000025439.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025439.4Link to Ensembl Protein Viewer:ENSMUSP00000025439.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000025439Re-query CCDS DB by Protein ID:ENSMUSP00000025439
Original member Current member NCBI NM_145494.3 NP_663469.1 Accepted alive Link to Nucleotide Sequence:NM_145494.3Link to Protein Sequence:NP_663469.1Re-query CCDS DB by Nucleotide ID:NM_145494Re-query CCDS DB by Protein ID:NP_663469Link to BLAST:NP_663469.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663469.1 589 Q99KE1 589 100% 0 0

Chromosomal Locations for CCDS 29339.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 73770626 73770808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73773130 73773228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73775379 73775449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73781042 73781144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73785695 73785837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73788354 73788468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73791084 73791197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73791609 73791706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73791801 73791910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73794446 73794549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73794781 73794942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73796314 73796389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73797829 73797978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73801729 73801862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73805052 73805159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1770 nt):
ATGTTTTCCCGGCTAAGAGCTGTTACCACTCCTTGTACCTTGACCTGCCGCCGAGTGCACCTGAAAGAGA
AGGGCAAGCCACTCATGTTGAATCCAAGAACAAACAAGGGAATGGCGTTTACGTTACAAGAGCGACAAAT
GCTTGGTCTTCAAGGACTTTTACCTCCTAAAATAGAGACACAGGATATTCAAGCCTTACGATTCCATAGA
AACTTGAAAAAAATGACTAGCCCTTTGGAAAAATACATTTATATAATGGGCATCCAAGAAAGAAATGAGA
AACTGTTCTATAGAATCCTGCAGGATGATATTGAAAGTCTGATGCCGATTGTGTACACGCCAACAGTTGG
TCTTGCCTGCTGTCAATATGGGCACATCTTTAGGAGACCTAAGGGATTGTTTATTTCAATCTCAGACAGA
GGTCATGTTAGATCAATTGTGGATAACTGGCCAGAAAATCATGTTAAGGCTGTTGTGGTGACTGATGGAG
AGAGGATCCTGGGCCTTGGCGATCTGGGTGTCTATGGAATGGGGATTCCAGTAGGGAAGCTGTGCCTGTA
TACAGCCTGTGCAGGGATACAGCCCGAGAAGTGCCTGCCCGTGTGCATCGACGTGGGCACTGATAACATG
GCACTATTAAAAGATCCGTTTTATATGGGCTTGTATCAGAAGCGAGATCGTTCCCAGCTCTATGATGATC
TGATGGACGAGTTTATGAAGGCGATTACTGACAGATACGGCCGGAACACACTCATTCAGTTTGAAGACTT
TGGAAATCATAATGCATTCAGGTTCTTAAGAAAATATCAACAAAAATACTGTACCTTCAATGATGACATT
CAAGGGACAGCTGCAGTTGCTCTGTCTGGTCTTCTTGCGGCCCAAAGAGTTATTAATAAACCAGTCTCAG
AACACAAAATCTTATTTCTTGGAGCAGGAGAAGCTGCACTTGGAATTGCCAATCTCATAGTTCTATCAAT
GGTGGAAAGTGGTCTCTCAGAAGAGGAGGCGCAGAGAAAGATCTGGATGTTTGACAAGAGTGGCTTGCTG
GTTAAGGGGCGGACTGCTAGCATAGATAGCAACCAGGAACCATATGCCCATGCGGCCCCAGAGAGCATAC
CTGCGACTTTTGAAGATGCAGTAAATAAACTTAAGCCTTCAGTTATAATTGGAGTGGCAGGTGCCGGCCC
GCTTTTTACTCACGGTGTAATCAAAGCCATGGCCTCTATCAACGAGAGACCTATAATATTTGCTCTAAGT
AATCCTACAGCACAGGCCGAGTGCACAGCCGAGGACGCGTACACGCTCACAGAGGGCAGGTGTCTGTTTG
CCAGTGGCAGCCCATTTGAGCCAGTGAAACTCCAGGATGGACGAGTCTTCACCCCAGGCCAAGGAAACAA
TGCATATATTTTCCCAGGTGTGGCTTTAGCTGTTATTCTCTGTGAAGCCCGACACATCAGTGACACCGTT
TTCTTAGAAGCTGCAAAGGCGCTGACGACTCAGTTGACAGATGCAGAGTTAGCCCAAGGGAGGCTTTACC
CGTCGCTGGCTAATATTCAGGAAGTTTCTGCTAACATAGCTATTAAACTTGCAGAGTACCTGTACGCTAA
TAAAATGGCCTTCCGGTACCCAGAACCCGAGGACAAGGCCAGATACGTGAGAGAGAGAATATGGCGGAGC
AACTACGTTTCCCTGCTGCCGGACGTGTATGACTGGCCAGAGTCTTCACTGACACCTCCTCAGATCACAG
AAGAGAAGCTTCCCCACTGA

Translation (589 aa):
MFSRLRAVTTPCTLTCRRVHLKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHR
NLKKMTSPLEKYIYIMGIQERNEKLFYRILQDDIESLMPIVYTPTVGLACCQYGHIFRRPKGLFISISDR
GHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIQPEKCLPVCIDVGTDNM
ALLKDPFYMGLYQKRDRSQLYDDLMDEFMKAITDRYGRNTLIQFEDFGNHNAFRFLRKYQQKYCTFNDDI
QGTAAVALSGLLAAQRVINKPVSEHKILFLGAGEAALGIANLIVLSMVESGLSEEEAQRKIWMFDKSGLL
VKGRTASIDSNQEPYAHAAPESIPATFEDAVNKLKPSVIIGVAGAGPLFTHGVIKAMASINERPIIFALS
NPTAQAECTAEDAYTLTEGRCLFASGSPFEPVKLQDGRVFTPGQGNNAYIFPGVALAVILCEARHISDTV
FLEAAKALTTQLTDAELAQGRLYPSLANIQEVSANIAIKLAEYLYANKMAFRYPEPEDKARYVRERIWRS
NYVSLLPDVYDWPESSLTPPQITEEKLPH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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