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Report for CCDS29416.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29416.1 Public Mus musculus 19 Cabp4 23 108 98 CCDS HistoryNCBI Gene:73660Re-query CCDS DB by CCDS ID:29416.1Re-query CCDS DB by GeneID:73660See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29416.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025761.7 ENSMUSP00000025761.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025761.7Link to Ensembl Protein Viewer:ENSMUSP00000025761.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025761Re-query CCDS DB by Protein ID:ENSMUSP00000025761
Original member Current member NCBI NM_144532.2 NP_653115.1 Accepted alive Link to Nucleotide Sequence:NM_144532.2Link to Protein Sequence:NP_653115.1Re-query CCDS DB by Nucleotide ID:NM_144532Re-query CCDS DB by Protein ID:NP_653115Link to BLAST:NP_653115.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653115.1 271 Q8VHC5 271 100% 0 0

Chromosomal Locations for CCDS 29416.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 4135987 4136015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4136114 4136261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4137107 4137216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4138549 4138692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4138774 4138804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4139203 4139556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (816 nt):
ATGGCAACAGAGCACAATGTACAGCTGGTTCCTGGCTCCCAGAAGATCCCTAAAGGAGTTGTATCTCCCA
GGAGTGCTGCTGAGGGCCCTGCCTTGACCAGGAGAAGGAGCAAGAAGGAGAGTTGGCACCCAGGGTCCCA
GAAAGCCAGTTCTGGGGACCAGTCCTCTAGCCAGGGCTCTGAGGCCTCAGGAAGCAGCAAGCACCCCCCA
AGGACCAAAGTGGGGCAGGAGGAACCATCCTCAGCCCCCGCCAGGCCAGCGTCTCACCGACACTCCCATC
GACACCGTTCTGACCCCCAGCAGGATGCTGCCCAAAGGACTTATGGGCCCTTGCTCAACCGCATGTTTGG
AAAGGATCGTGAACTGGGCCCTGAGGAGTTGGAGGAGCTCCAGGCTGCCTTTGAGGAGTTTGACACTGAC
CAGGACGGCTACATCGGCTACCGCGAGCTAGGTGACTGCATGCGGACGCTGGGCTACATGCCCACGGAGA
TGGAGCTTCTAGAAGTGTCGCAGCACGTGAAGATGCGCATGGGAGGCTTTGTGGATTTTGAAGAGTTTGT
GGAGCTGATAAGCCCAAAGCTGAGGGAGGAGACAGCTCACATGCTGGGCGTTCGGGAGCTACGCATCGCC
TTCCGAGAGTTTGACAAGGACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTC
TGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGG
CACCATAGACTTTGACGAGTTTGTAATGATGCTATCTACAGGCTGA

Translation (271 aa):
MATEHNVQLVPGSQKIPKGVVSPRSAAEGPALTRRRSKKESWHPGSQKASSGDQSSSQGSEASGSSKHPP
RTKVGQEEPSSAPARPASHRHSHRHRSDPQQDAAQRTYGPLLNRMFGKDRELGPEELEELQAAFEEFDTD
QDGYIGYRELGDCMRTLGYMPTEMELLEVSQHVKMRMGGFVDFEEFVELISPKLREETAHMLGVRELRIA
FREFDKDRDGRITVAELRQAAPALLGEPLEGTELDEMLREMDLNGDGTIDFDEFVMMLSTG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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